Array 1 12428-16155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCF01000054.1 Streptomyces sp. NRRL WC-3742 contig54.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 12428 29 82.8 36 CAG..CC...................... CCGGGTGGAGCTGCTGGTCCTTGCCGTACGCGCGGC 12493 29 96.6 36 .......A..................... CCGCGTGGGGCACCTGGCCGTGCAGGAACTGGGCGG 12558 29 100.0 36 ............................. CGGTGATGGCCGCGAGGACGGCGGGCAGTTCGGTGG 12623 29 96.6 31 ..............G.............. GTGACGGCGAGTGGGCCGGCCACGAGACCAC 12683 29 100.0 38 ............................. GTCATGAAGTCCCGCCGAACGACCACCGTTCGGGAGAT 12750 29 100.0 35 ............................. CTGCTGACCTCGCCCGGCGCGTAGGTGGCTGGCGT 12814 29 93.1 35 ............T..............G. GGTGAGGTTGGCGACGTTCTCGACGCCTTCCTCGG 12878 29 86.2 36 .....C.........A.A.........G. TCGCCCCGGCACCGGCCGCCTCCTCGTGATCGTGAC 12943 29 93.1 36 .....C....................C.. GGCCGCGCTGCGCATCCAGGACGAGGTACTCGACAT 13008 29 93.1 36 ...C..........G.............. GGAATCGCAGGTCACCGCCACCGAACTGCTCATCCG 13073 29 89.7 36 ..............G...G.....G.... CGACGTCGTGCGCACCGCAAAGGTCCCCGCCGGCAT 13138 29 89.7 38 ......G........A...C......... GCCAAGGCCAACGGCGTGCAGGCCCTGCAGGACATCGG 13205 27 89.7 32 ......................-.-...G GTGCCCACCAACGCGTTCCAGTCGGCGTTCCT 13264 29 82.8 37 A..A................C...C..T. TGGAGGTGCCCGGTACGGACGAGGCGGACTGGTCGCC 13330 29 79.3 36 .........G....GA.......AT..T. CACCCGCGCCGCGCGCGAGCACATCGAGCCGATGCT 13395 29 89.7 37 ......................T.G...T CCCGCGCAGGTGTCGATCACGAGCGTGTCCGAGGCCG 13461 29 96.6 36 ......G...................... CCGCGTTCCGGGTGACCCGCTCGCCGGTGCCAGCCG 13526 29 100.0 36 ............................. CCGGATCGTCGCGGCTGAGTTGACGGAGGCGCCGGC CCCT [13534] 13595 29 100.0 36 ............................. GTCGGGCAGGACGCCTTCCTCGTCCGGCAGGGACAG 13660 29 89.7 40 ....................TT....C.. TCTCGAGTCCGCGCCCCGCCCGCCTCGCGCACAGCAGCAT 13729 29 100.0 35 ............................. GTCAGGGGGCCTACGGCCGTCCGGGAGAAGCGCAG 13793 29 93.1 36 .....T.....................G. CCGGCGCGAGGCTCCACTGCCCGTGCCGGTGGTCGC 13858 29 96.6 36 ...........................G. TGGGGATGCGCGGGCCTTCCTTGCGCCACCACTCCG 13923 29 93.1 36 ...........C...............G. GAGCAGGGGAGCGGGCATGGACGGGCACGGCACCAA 13988 29 96.6 36 ...........................G. CGCCCAGAGCGCGATCGACCGGTCCGACATAGCCAC 14053 29 93.1 35 ...A.......................G. GGGCCGGGACGCGGATCTCCCCCGGCAGACGCCTC 14117 29 96.6 36 ...........................G. GTTCGCCCCGGGTGACCTGGTCCACGTGCGGCGCAC 14182 29 96.6 36 ...........................G. CTTCGTCTTCCCCGGCAGCGAATACCTCAGCGCCCT 14247 29 96.6 34 ...........................G. TCGCGCGTCATTACCGGTTGCGCTGGCGGCCGAC 14310 29 96.6 35 ...........................G. CTCCCGAGCACACATGCGGCACCCCGCCGTGGACG 14374 29 96.6 36 ...........................G. CCGGCTGGTGGTCCCGCAGGTCCACTCCGGTCTCCT 14439 29 96.6 36 ...........................G. TCGGCTTCGCGGCCGGATGGTGAACCCACCTCGTCG 14504 29 100.0 35 ............................. GTCAGGGAGCCTACGGCCGTCCGGGAGAAGCGCAG 14568 29 93.1 39 .....T.....................G. CTCGCCGTGGGTGCCGCACGTGTGCGGGGCGTACAGCAA 14636 29 93.1 36 ....G.....................A.. ACGAGGCCAGGCTGCTCAACGCCGCGCTCGCCCAGG 14701 29 93.1 35 .....G...............G....... GTCTAGGAGGCGCGGCTGCTGCGCCGGCACGGCAT C [14729] 14766 29 96.6 36 ...............A............. CCTGTTCGCTCCCGGCTCGACCACCGTCCTCGACTA 14831 29 100.0 36 ............................. CGGCGCGGGAATCCCCGTCCTGGCCATGGAGCACGT 14896 29 100.0 36 ............................. GTGGTCGACGGCGGGCGGGGTGTCGCGCTTGCGCTT 14961 29 100.0 34 ............................. GTGTCGCCCGGCCGCGCGTACGCCAGCAGAGCGC 15024 29 96.6 36 ......G...................... CGCGCCAGGCCGGCGCGCTGAACCCCGCGCTCGTCT 15089 29 100.0 35 ............................. CGGTGGATGTTGCGGCCGGCACGGGCGGAGTCCGC 15153 29 100.0 36 ............................. TCCGGCCCGTCCACCACGGACCGTCCCGGTCACCGG 15218 29 100.0 34 ............................. TGGTCAGAGTGCACCACCAAGCTCTGGGAAATGC 15281 29 100.0 37 ............................. CGGAGGAGCACCTCGCACGGATCGGCTGCTCGTGCGC 15347 29 100.0 36 ............................. GCGGGCAGCCGTCGGTCTACCGCTGCCAGGGCCACC 15412 29 96.6 36 ..........................T.. CGGCCACCCCGCGCTGAACATCGTCCAGGGCGGCAC 15477 29 100.0 35 ............................. CTCGTGCAGATCCTCTCCTGCCCGGTCTGCCTGGC 15541 29 100.0 36 ............................. GGGGTGCCGCCGTTGTATCCAGGTACACCTCTCCCC 15606 29 100.0 36 ............................. TGGCCAGGCGGAGCAGGTCCGTGCGGACGTCGCGCT 15671 29 100.0 37 ............................. GCAACAACGTCAACCAGATCGCCAAGGCCCTGAACAG 15737 29 100.0 36 ............................. GCTCGCCGCCATCCCGGCCGGCACCGTCGTGGACGT 15802 29 100.0 36 ............................. GAGGTCCCAGATGAGCAACCGCCACATGTCCGCCAG 15867 29 100.0 37 ............................. GCTGCTCATCACGGCCGCCCGGGCCCACGGCGCCAGC 15933 29 100.0 35 ............................. AAGTCCCCGCCCAGCGGGTCCAGTTCGGCGAACAG 15997 29 100.0 36 ............................. CCGGCGCGGCGCGGCGGGCCGGGCCCGCGCGATCCG 16062 29 100.0 36 ............................. GGCCGACCAGGACCTCCATCGCCCGCCCGGAGGTGG 16127 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 58 29 96.0 36 GTTGCAAGCCCTCCAGGGCTGAGCACGAC # Left flank : CGAGCAGCACGCGGACACGGACTCCCGACCGCGCCCGTTCAGTGAGCGTCCGATGCCACCGCGGGTTCTCGGCGAGATGCACGCCGGCGTGAACGAGGACGCCGATCTCGGTCGTGGCCCGCTCGGCGAACTGCAGCCACAACTCCGGTGGTACGGAGGACCGGTGCGGGTAGAGGTGGACGATCTCCGCATCAGCCTCGTCGACGCGCTGGGTCTCCGACTTCGCGTCCGGCCAGAGATAGTCCTCGTCGATCTGCAGGCGGACAAAGATGATCTTGATCAGGGGTGCATTTGGAGACTGAGAGCAGGTATCCGGCCGTCCCACAGAAGGTCGGCATGGACGATGAGTGCTCTCGTGTGTTCGCACGTGCAGCAGGGTGTACTCATCCTCATGCTGACCTCATGCTGACTTTCCTGACTGACCGTCAGGTCGCTATCGCCCCGGCGGCCTCATCGCTGGCTCCACGGTCCATCCGGTTGGGGGGAACCACTTCATCCGA # Right flank : CCCGAGGGTAAAGTCCGAGGTCAGAGTACCTGCGAGCGCCACTGCGGGTCGCGGCCATGCAGCGACCTGCGAGTACTGCAGCGGTGCTGGTCACAGGATGTCGCCCGGGCCGCCGAGGGTGGTGCCGATGGTCGTGGCGGCGATCATGTCCGGGGATCGGGCGGTGTACGTCACGATGCTGTCGTAGGTGGGGTCGATCACGGTGTTGAGGGTGTGGGTGAGGGCGCGGTACTGGGCGGCGGTGAGTTCGCCCTGGAAGACGCTGCGCTGGGTCCAGTGGAGGTATTTGCGGCAGGTCTTCAGGACTTTCGGGTTGCGTTCGGCGGCGGTGTCGTAGACCAGGATGACGAACATGGGCGGCTACCACCAGGGCCGGAAGGGCTTGTACGGGGTGTTCTCCAGGCACAGGCGGACGAGTTTGAGGGCTTCGAGGTGGATGATCTCCTCGTAGCTGACCTTTCGCTTGAGCCCTCGGTGGTACACCGTCGTCGCGAGTTCCT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCCTCCAGGGCTGAGCACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 24554-25169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCF01000054.1 Streptomyces sp. NRRL WC-3742 contig54.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24554 29 100.0 35 ............................. GTGCTGGGTCGGCGCGGTCCGACCCGGGCCGCCCT 24619 29 100.0 36 ............................. TGGTCTCCTCTCGGGTGGTCGAGCTGCCCTCCTGGC 24684 29 100.0 37 ............................. TCAGGATGTGCTTGCAGGTCTTCACCGGGTACCTCCG 24750 29 100.0 36 ............................. CCCACTCGTGACCGGCCCGGGTCTCGTACCGGCGGA 24815 29 100.0 37 ............................. CCATTCCTCGGCGCCGGACGGGGTGGAGTAAGTGCCG 24881 29 100.0 36 ............................. AGGAGTCGGGTCACGGTCGTGACCCCCGCCCCGCCG 24946 29 100.0 36 ............................. ACGGGCTTGCCCATCGGCCACACGTCCGGAACACCG 25011 29 100.0 36 ............................. CGCGGCCAGCACTCACATGGACGGCGCCGCCCTCCG 25076 29 86.2 36 .......C......T...AA......... AGCACGTTGGGTGGAACATCCAGCACGGCCGCCGGA 25141 29 86.2 0 .....A.CTT................... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.2 36 GTCGTGATCAGCCCCGGAGGGCTTGCAAC # Left flank : ACGTGGAGTACACGCCCTTCTTGCGCGGCGCCCCCAGAAACCGCGGACCGGCCACCCCCACCGGCTTCAGCGGCTTCCCCCGCCACCCGTCGTTGTGCAACGTGTTCGCCAACGCCTCGTCCTGACTGCTCAGCAGCCGGTACACCACACCCCGCGCCGCCCCGTGCACCTCCTCCCACCGCACACGAGGCGCATCCGGCACCACATCAACCCTCACCCGCACTGCACTCTCCCGACGACTTTTCAGCAACCTGGCCACGCAGCAAGGTAGTTGGATGCAAACGATTGACGTTCCATTCCTCACAACTTGCACCGATTGCCACATGTTTGTGCTATGAGCTCCGGCAGCGCCGCCGCCCCTGCACAACAACAGCGTCTCCCCGGGCGCGGCTCTACCCCAAAACACTCTGACCTGCGGCGATGCACTACCGTCGAGTCGCCGCAGCTCGACCTTGGCAAGCCAATCGCCCACGCCGGCGGACCTGGTGCTTTACCCTCGG # Right flank : CGCGGTGCTGCGGACGAGCGTGAGCGGCGGCTAGGAGCTGTCCGGCCGATCATGTGACGGTCGCCTGGTCGGATTGTGCGCCGTCGTGAGCTTTCCAATGCCGAGTGGGCGGTGCTGTCGCGGTTCCTCACTCTAGCGGGCGATTGATGATCATTCGCATATCGGAATATCGTCGGCTTGAAGGAGGAGAGGCGTCAACATCCATGACGCCTCGCGTCTTGATGCCGCTCTATGTCGGATTTACCGGATACGCCAGTCAGGTCCTCGCCGACATGCTCAAGATTGTCGACGGGGACGGAGGGCTTGGAACGTCATCGACCGGGGATCCCGGCTTGCTCCAAGTCACCTACAAGGCGACGACTCTAACCCCCACCCGCCAGTACTTCGACCGTGTGGTGAACGGGACTCCCAATGACTCCGTCGTGGTCTACGGGCTCGACAACACGGCATTGATTCCGACCTCCAGCGGGCAGGTTGCGATCACCTCTCTGGCCGGTGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGATCAGCCCCGGAGGGCTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //