Array 1 71334-69690 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRV01000016.1 Bifidobacterium longum subsp. longum strain MCC10074 contig0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 71333 36 100.0 28 .................................... TCCCCTTTAATAGTGCGTTTCCCCTACT 71269 36 100.0 28 .................................... TATCGCCTTCCAAGTAGTCGGCGAGAAA 71205 36 100.0 28 .................................... GTGATGATAACACACTGCAAAACAAAGC 71141 36 100.0 28 .................................... CAACATCGAAAGCATTGAACAGGTAGAA 71077 36 100.0 29 .................................... TTGCGGCGGTTGCGTTGATTCTGGCGTTC 71012 36 100.0 28 .................................... ATTGTTGACGCGCTGCACACGCTTTTGC 70948 36 100.0 29 .................................... TATCTCGGCGGAGAGGTCACGGCGCTTGA 70883 36 100.0 28 .................................... ACAAGCTCAAGGACTTCGACAACGCGAT 70819 36 100.0 28 .................................... GTCATCTTCAACGATGCAACGGTTAATC 70755 36 100.0 28 .................................... TCCAACGGGATGCGGTACAGGGGCATGT 70691 36 100.0 29 .................................... ATATGGTTGCACATACAACAGTTGCGTTA 70626 36 100.0 28 .................................... TTTGGTGAGGAGTTGGATGTCGCGTCTC 70562 36 100.0 28 .................................... CTTGATTTTCGTCCTGTCGTTCCGTCTG AT [70555] 70496 36 100.0 28 .................................... GTTTCGGCCCGAGCTGCACGCCGCGCGC 70432 36 100.0 28 .................................... TCAGTAAAGTGAACCATATGAACACTCT 70368 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 70304 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 70240 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 70175 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 70110 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 70046 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 69981 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 69917 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 69853 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 69789 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 69725 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 26 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTAAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 12901-13240 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRV01000009.1 Bifidobacterium longum subsp. longum strain MCC10074 contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 12901 28 100.0 33 ............................ GAGGAATGGGATCGCTGTCCCGCCAGCAGTTAC 12962 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 13023 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 13084 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 13151 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 13213 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 96.4 35 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAGGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 16962-17538 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRV01000009.1 Bifidobacterium longum subsp. longum strain MCC10074 contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16962 28 100.0 33 ............................ CAGAGCGGCGCCATCAAACTGGCCGACCGCTTC 17023 28 100.0 33 ............................ TGTGCACGTCTTGCAGATGGTGTTGCATCCGAA 17084 28 100.0 33 ............................ GCAACATGACGCACCAGCCCGCAGAACGTCCCT 17145 28 100.0 33 ............................ GAAACGGAAGAGTCTACGCCAGAGTCATCGATG 17206 28 100.0 33 ............................ GAAACATGGCACTGCCCATCCAAGTAAATCCCA 17267 28 100.0 33 ............................ CCATTGGGATTTCGACTGGCTCGATCGCATCAT 17328 28 100.0 33 ............................ TGAGTGGGGCAGGTGGGTATAGAAACGGCCCGG 17389 28 100.0 33 ............................ GGCGTCTTCGACTCAGGTAAGGTCACATACACG 17450 28 100.0 33 ............................ GTTGGGAGTCAGCGCGCCGGGAGCGGTTTCCAT 17511 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CGCGACTCAGAAAATTGACCCGGCAACCATGCACATCTACCGTTGTAGATGACTTTGTTTTAGCTTGTCGCTAGAGCGAAGTCATCTGCATGGCCTCGTTGCCGAGACCAGCTCCAAGTCTCACGCGACTGTCGCCGCCGCTTGGTTCGCGTTTCGCCGGATGCCGCATTGTCCCGCACTCAAGGCGGGTCTGTCTTACGCTTCCTCCACGCGCGTTTAACGTCTCCGGGGCACTCCCGGCGACTTGGATGTTGATGGCCGCGTTCACATCACGGTCGATGACAAGTCCGCACTTGCCGCAATGGTAGACGCGCTCGGACAGGGGCAGTTTGGCTTTCACCGTCCCGCAGTTCGAACAGGTCTTCGAGCTTGGATACCAGCGGTCGATGACATGGAGCCTCGTGCCGGCGCGTGCGGTCTTGTATTCCAGTTGGCGGCGGAACTCGTGGAAGTCCGCGTCCAGTATGTGTTTGGCAAGCCTCCTGTTACGGCTCATGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 19566-20139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRV01000009.1 Bifidobacterium longum subsp. longum strain MCC10074 contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19566 27 92.9 33 .A.-........................ GGATATGAAGGGTGTGGATGGCGTCGTGTTATG G [19571] 19627 28 96.4 33 ..............T............. GGTCGGGACTCTTCTCCGTATATCGTTCATCAA 19688 28 100.0 33 ............................ GAATGGCGGTTACGCCGATTTCGCACCAATTCC 19749 28 100.0 30 ............................ GGTACTCACAATGGCCGACGAAATGAAGGA 19807 28 100.0 33 ............................ TGACGGTGCCGTCCGGACGCGTCAACGGATGGT 19868 28 100.0 33 ............................ GAACACCCAGCAGGTCGAGGATGAAGATCGGAA 19929 28 100.0 33 ............................ GTCCGTCGACGTAAGTCGCCATGATGCTGCCCT 19990 28 100.0 33 ............................ GAGCGAAGCTGTGATGGCCATGGGCGAGGATGC 20051 28 100.0 33 ............................ GTCTGGCTACTCGATCATATGAAGGCTTGTCCA 20112 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : TGATTCGGCGTCCCTGCGCCTTCAACGCGCTCTCCACCAGTCCCGCGTTCATGCGGGCGAGCCTGTCCCTGTGCTCCACGATCAGCGTGCCCACGGTCGGGTCGGACAATAGCCGGTTGAGCTTGCGCCGCTTGTCGTTCATGCCTGAACCGGTCTCCATGACCACCTCCGGCCGCTCGACACCCATGTTCAGAGCGAACGCCTTCAACCGGTCGGCTTGACGTTGCAGGTCGTTCTTTTGGTCGCCGCTGGATACTCGCGCATAGCAGACGGTGCGGGGTTCCATGCTTTTCGATTGCGGCATGGTCTCGTATTTCGGGTCGTGGATGAGCCACATGCCGGTCGGCGTCTGTTCCACAGGAACGGGCATGGTGCCCTGACGGCACCATTTCCACACGGTCTGCGGATGCAATCCTTCCAGTCTGGCCCATTCCTTTACCAACATGGGATTTATTATAACATAGGATTACTTAAGAAAACAAAACAGTTCGGTAACAGGC # Right flank : CCTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGCGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //