Array 1 110113-108372 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBH01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 77-0760 NODE_1_length_626353_cov_3.43448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110112 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 110051 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 109990 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 109929 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 109868 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 109807 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 109746 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 109685 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 109624 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 109563 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 109502 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 109440 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 109379 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 109318 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 109256 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 109195 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 109134 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 109073 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 109012 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 108951 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 108890 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 108829 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 108768 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 108707 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 108646 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 108585 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 108524 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 108462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 108401 29 96.6 0 A............................ | A [108374] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119854-118847 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBH01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 77-0760 NODE_1_length_626353_cov_3.43448, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119853 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 119792 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 119731 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 119670 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 119608 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 119546 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 119485 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 119424 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 119363 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 119302 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 119241 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 119180 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 119118 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 119057 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 118996 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 118935 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 118874 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //