Array 1 867719-870703 **** Predicted by CRISPRDetect 2.4 *** >NC_020913.1 Candidatus Methanomethylophilus alvus Mx1201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 867719 36 100.0 26 .................................... CCACGTTAGGAAGGCTCTGCCTATCG 867781 36 97.2 27 .........G.......................... TGCGGAGTCCGTTGCCTTTGTTATTGA 867844 36 100.0 26 .................................... AAACGGTAGCCCAGGAAGGCTGGCCA 867906 36 100.0 28 .................................... GACGGAAGTGATAGGGTAACCGCACCTC 867970 36 100.0 26 .................................... GATGCATCCGCAATGTGTGCCTGCTC 868032 36 100.0 27 .................................... GTACCTTGACCGCAAAAAGTGAACCGA 868095 36 100.0 25 .................................... TAACATGACAGGAAATCCACCCGAT 868156 36 100.0 26 .................................... CCTCGGCGGCAGATGTGGAGACAGAA 868218 36 100.0 27 .................................... ACATCAAGCCCCTCCAGTCATCCGTCC 868281 36 100.0 25 .................................... ATTAAAAGGGGCAGTGCCGAACCGA 868342 36 100.0 27 .................................... CCACTTCACAGCCAAAAGCGTATCTTT 868405 36 97.2 28 ...............G.................... CAACCAAATATGGCCCGTTGTTGTTTGC 868469 36 100.0 28 .................................... CAACCAAATATGGCCCGTTGTTGTTTGC 868533 36 100.0 27 .................................... ACTTATGACGACATTTTTAGGGCATAC 868596 36 100.0 27 .................................... CCCTGCCGCCTGAATATCTTTGCACCT 868659 36 100.0 26 .................................... GCCGGAGGCGTGGCGGGATGGTTCCT 868721 36 100.0 25 .................................... GTTTCGCCCTCTCTCGGTTCATCAA 868782 36 100.0 26 .................................... TCGCCTTGTCTCGAGGCGGTCCTTGT 868844 36 100.0 26 .................................... CTTCAGATCTTCAGGATCATCCTCAA 868906 36 100.0 27 .................................... GGTGACGCAGCTGACCGCCGAACGCGA 868969 36 100.0 26 .................................... TCTCTCCTTCATCTGGCCTGTCCGTT 869031 36 100.0 27 .................................... GAACGCCCGGAGGTCGAAGGCCGCAAG 869094 36 100.0 28 .................................... TGTGCGGCTCGTCGCTTTCCCCGTGGTA 869158 36 100.0 26 .................................... TACCCCTTCCTCCGTACGTAGTCTTT 869220 36 100.0 26 .................................... CACAGCCGACTTCATCAGGAAGAGAC 869282 36 100.0 27 .................................... CCACGAAAGCCTTACGCTCCGCTTTGA 869345 36 100.0 26 .................................... ATGCGCTCCGCGATCAACTCCATCGA 869407 36 100.0 26 .................................... CAGGCGGACATGGAAAGCGCGATAGC 869469 36 100.0 27 .................................... ACGCTGAAGATAGACGACGTGAGCTTT 869532 36 100.0 29 .................................... TAACCTTCCGTAAGTAACACGTTTATATC 869597 36 100.0 27 .................................... CGATCATCGCAGACGAGGTAGATTCAT 869660 36 97.2 26 .................................A.. AGTGTCTGTTCACGTGTGGTATTCTT 869722 36 100.0 26 .................................... CCGGTCTGCGTCCTTGGCGAAGCTCT 869784 36 100.0 27 .................................... AAGAAGGCCGTGGTGGTCACCGCCACT 869847 36 100.0 25 .................................... GCACCACGTGGGCGACCCTCATCAG 869908 36 100.0 25 .................................... AGACGTTGAATCTCTGGCGGTTGCT 869969 36 100.0 27 .................................... CAGGTCGAACTTGAGAACGGAAGACTT 870032 36 100.0 26 .................................... CTGCAGCGCACTGTTCCCAATTTTAA 870094 36 100.0 26 .................................... CGCCCGAAGAAGCCCAGGAATTCTAC 870156 36 100.0 27 .................................... GTTCACGGCACCGTGGGGAATATCGTT 870219 36 100.0 26 .................................... TCCGGTCTTGGAGTAGTGAGCCACTT 870281 36 100.0 28 .................................... GGGAGTTCGACCAGTTCATAACCTGGAA 870345 36 100.0 26 .................................... GGAGCAGTATTAGACTTAATCGTCTG 870407 36 100.0 26 .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870469 36 97.2 39 ...................................T GAGTTTTAGACGGGAGTTCGACCAGTTCATAACCTGGAA 870544 36 100.0 26 .................................... GGAGCAGTATTAGACTTAATCGTCTG 870606 36 100.0 26 .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 48 36 99.8 27 ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Left flank : ATTCGCCCCGAGTCCGTACTCTTCACGGACCCTCTCATCCTCCAGAAGGCGATCGAGTCTCCTCACGGAAAGACCGGTCATCTCCACCGAGTTCGCGACCAATGCGATCGTTTCGGACGCCACCGAGTTGCCCTGTCTCCTCTTCAGATCGTCCAGGAATCCGTCCAATCCCGTGTCCGAGAACACGGATTCCACCAGGACCTTGTTGCCGACGGTCATGGTGAGGTTGTTGTTCGGCTTCGGCATCCTGGCATGTATCCTGCTCATCCTGCGCGACAATCCATCACTTGTCCCGCCAAACATCCCAGGTCCCGGACCGTAACTTTAATCCGAATGATTCCGATGTGGAAGACAGCCTTTCGGCCTGTTTGTGTTTGGCGACTTAAACGAATCGAAAGGCCGCTTTTATTCTATCGCCAGCAGACCGTATCGTGCAGGGCGTCAGCCCCTGCACCATATCAAAAATTCACTTGATAACTGTCACACTCGGGTCTTAATCA # Right flank : CCGAAATTCTGCGCGTGTAAGTAACTCAACCCTTGGGAGTTGCGAGACATCTCAGATCGCATACCTCGATGCCCAAGACGGGTTCATTGGGTACTTCCACTCCGAACATTCCGAAGATGTTCCTGCAGTTCTTGGATATCTCCGAAAGAGCGGACGAAGAACCGTAACTCAGACAGTTGATCGTGTTCAGGTACCCCAGAGTCTGACCGACGGACATCTCCCGTTTGCCGGATTCCCTTATCTCAGCGCACAGTTCGCATTTGAGGATCAGTGAAACGAACTTTATCAGCGAACGTCCGATCATCGTGTATTTGTCGGGAGTACGGTGCCTCCTGTCGTCCGATTTGCTGAAATCGAACGCCTGTTCGGTAAGTCTCCTTGCGTCATATGCCGTCATAACCGTCGACCAGTCCAGATCCGATGAGGATAACATGACGAACACTCCCGCGCGGTTCTCAGCGAAGCTTACGGAATTCTGCTTCTCCTTGACGATCACCTTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 872607-873394 **** Predicted by CRISPRDetect 2.4 *** >NC_020913.1 Candidatus Methanomethylophilus alvus Mx1201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 872607 36 100.0 26 .................................... ACATATAATCAATGGCGGATGTCATA 872669 36 100.0 27 .................................... ATCGTCCGCATCGGCATCCATCAATCA 872732 36 100.0 26 .................................... GAAATGGCAGGGAAGCGGACGGCACC 872794 36 100.0 27 .................................... GGGCGGTGAACACGCAGTGGGCGCTAT 872857 36 100.0 27 .................................... GGGCGGTGAACACGCAGTGGGCGCTAT 872920 36 100.0 26 .................................... CAATGCAGGCTCTCCAACCAGTCCTT 872982 36 100.0 25 .................................... ATCCGCGTCGAGAAGGTGGGTGCGT 873043 36 100.0 27 .................................... GTATGGTGTCAATAACATCCCCCAGGT 873106 36 100.0 28 .................................... TATGGAGACTCGGATTTAGTCTCGCGAT 873170 36 100.0 27 .................................... CGGATTATGGGTCGGCAGAATGAGGGT 873233 36 100.0 27 .................................... AACATGTAACACAATGCCCAAGTTGGA 873296 36 100.0 27 .................................... TTACAGGAGGCAGATAAATGCGTATTC 873359 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 13 36 100.0 27 ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Left flank : ATGGTCTTCCCCGAATTGCCGAATGCCCTCATGAGGTCCTCGCCGAGGGACATCCTCAGCTGCACTTCGTGCAGCAGGTATGTCGCCCCGTACTCCTTTGACGACACACCTTTGAGAATCGCGATCTCCTTCTCTTTCGCGATTTTTCTGCGGTTCTCTGCAGATTTTTCGGGAATCTTGGGAAGCAGCTCCTTGGTGTCGGGATCCACCCTGCCCAAGTAGGTGGAAACGGTCTTTTTCTTACCGTTTTCCATAGTAGAGGTTACCTCATAAGCATAGAATCTGTCCCCTCTTTTGACGATCGTGCGTTTGATTCCGTCTCCATCCCTCGGTCTGACCATGTTATTACCTAACATAAACTGTATGTAAGTAATGGTATATAACACCTCTTACCGTACCCTAGCCAGCATATGAAAAATTGATCAGAAAACAGGATTGCGATTACTTAGCACGCGCAGAATTTGGGTTTTAGACTGGACACGGTCCAACACGGTCCAACC # Right flank : CCCGATAGTTCGTACAAGGCCCATTTTAATCGGTTTAACGCGTTAGATCAATGTTATATATCATAAATAAACGTTTTTTTCATCATATATATACAGATTCGGACATCGTGCTGAAAAGAAGACGGAGGTTTGTCAAACGATCAGCAGATCGCTCTCATCGTGGACCGCATGACCCATCCTGATTACCTCCGAGGATGCAGAAAGGTTCATTATCAAAATACTGTCTGCTTCCGAAAACTTCGGCATGAATTCATTCTCTATGTCCGCCATTATATTTTTTAACACACGTGATGAATTATCTATTTCATATACGGACATCTGCACCCTGTTGCCAAACCTCAGTATGTATTTCATAAATTTTGTACGCAGCTTGGTATCTGATATGTCATAGCTTATGAGTATCATGTTTTCAGCATCTGGAAATAAGGCATATCCTGTGCACACATATCTTTCATGAACAAACGGTAATATTTCTGAAAATAGAGAAATATATCCGTCTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //