Array 1 179905-182953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIJQ010000001.1 Porphyromonas circumdentaria strain DSM 103022 Ga0373368_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 179905 30 100.0 34 .............................. AAACGGGCTTGGTAGATAGCACTGAAACGCTCAG 179969 30 100.0 35 .............................. CCTCGACGAGAAAGGAAAAGTGCGATGGAAAGAGA 180034 30 100.0 37 .............................. ACAGTGGCTTAAGGACGAGGATTGGAGAGTGCGTAAC 180101 30 100.0 35 .............................. GTCGATATCATCGATATCGTCAATATAGTAAGGGT 180166 30 100.0 36 .............................. CCTAAAAGCGCGAGACGGGCGAATATTGCCCGGATT 180232 30 100.0 36 .............................. CAAACCGTCATTCAAGTTGCCCTCAAGGGGCGACAC 180298 30 100.0 35 .............................. GGGCGACCATCTACCCCCCAAACGGATGGGGCTGT 180363 30 100.0 36 .............................. AGTCGGAAACGGTTTTATACACAGCACGGGCGCAAA 180429 30 100.0 34 .............................. ATAATCATAATCGTATTCTTTAAATTCTCTTACT 180493 30 100.0 35 .............................. TAAAGACTTGTTTTTTAACGCTCTGCATTTTGTCG 180558 30 100.0 36 .............................. ATTACGATATTCTTCAATCTTAGATTGAATTTCTCT 180624 30 100.0 36 .............................. ATAACGTTACTGTCCCAAACCAAGCTCTTCCGCTCA 180690 30 100.0 37 .............................. AAAAGAACCCAAAAAATAGCATCCGCTATTGTTGTTT 180757 30 100.0 36 .............................. ATTACGATATTCTTCAATCTTAGATTGAATTTCTCT 180823 30 100.0 36 .............................. ATAACGTTACTGTCCCAAACCAAGCTCTTCCGCTCA 180889 30 100.0 37 .............................. AAAAGAACCCAAAAAATAGCATCCGCTATTGTTGTTT 180956 30 100.0 34 .............................. CTGTTGGAGATCGTCCTCTAAAAAGGATAAAGAG 181020 30 100.0 35 .............................. TTGATTGGTTTGGAGGGACTAACGAGTATGGAGAT 181085 30 100.0 35 .............................. CAGAATTTGGCTGTTTGTCAGGGTCTGTTGTAATA 181150 30 100.0 35 .............................. CTCTTCGTTTCGTCAGTCGCTTGTGCGTGATGTGC 181215 30 100.0 34 .............................. ATCCTCCAACATATTAAAGTAGTGTTAGTTCTTA 181279 30 100.0 39 .............................. ACCAATTCGGTAAGACTTTCCATCAAACTCCTCTATCGA 181348 30 100.0 36 .............................. AATTTCTACAAGAATTGGCATGTGTTGTATTAGATT 181414 30 100.0 35 .............................. ACAGTAGAGAATACTGCAATCAAGTCTGTCTAAGC 181479 30 100.0 36 .............................. ACCGCTATACCCACAAAAATGGGTATAGCTATGGTG 181545 30 100.0 37 .............................. ATATTAAATTGGCTTGTAAGTATAAATTTCATCATAC 181612 30 100.0 37 .............................. AGATTTGAGTAAATTCTTGGGTTGTGCTAATAGCACT 181679 30 100.0 35 .............................. TTTTCGCTGCCTCTTCTACCTCTGCCCAAAATCGT 181744 30 100.0 37 .............................. AAATTGACTATTCTCTGCCTATATGTAGAAGGTCTAA 181811 30 100.0 37 .............................. GTGTATGGTCTTTATATTGACTTATGCAAAGAGCAGC 181878 30 100.0 35 .............................. TAAGGACCTTAGCGCGATTGATGTAAAAAAAAACT 181943 30 100.0 35 .............................. TAGATGAGAAGGGCTTGAAGTACCGCTTTGAAGCT 182008 30 100.0 36 .............................. ACCTCGAGGCGCAAATGAGAGGGGCGGGAGAGGCAA 182074 30 100.0 35 .............................. ATCCGCAAACTCTTTATTCCTAACCTCTTTGCCAC 182139 30 100.0 35 .............................. AAGAAAGGAGCAGGCGCAATGAATGAACTAACACA 182204 30 100.0 36 .............................. ACTTTGACAACGCAGTCTACGACTTGCTAAAGTCGA 182270 30 100.0 36 .............................. TTGGGAGACATAGAGATTTTGATCCTGATATTAAAA 182336 30 100.0 36 .............................. AGCACTGCTATTGCCAATACACGAGCACATCTTTTT 182402 30 100.0 36 .............................. AGCGAAATTCGAGTCTTTGAATCGGACGCGGTAAAC 182468 30 100.0 35 .............................. ATCATCAAGTTTCTCTAAGGTATCATAATGAGAAC 182533 30 100.0 34 .............................. GTGCGCAACCTATTGGGGCAGGAGCGCATCAAGG 182597 30 100.0 36 .............................. ATTGATCCTTCTATTCTTGATGAGAACCTATTCCTT 182663 30 100.0 35 .............................. GCATCTGAAACCTCTTTGTCTACAATTTTGCGATA 182728 30 100.0 38 .............................. GTGTTCTGCACAAACAACGTGATACACGTTTTTATGCT 182796 30 100.0 35 .............................. TATTGAGAAGGATATATAAATGTTGGAGGTATTTT 182861 30 100.0 34 .............................. GCTATTTAGTACATCAGCCTTTCCTTGAAGTTCC 182925 29 90.0 0 ..................C....-.....A | ========== ====== ====== ====== ============================== ======================================= ================== 47 30 99.8 36 GTACTAATCGCACTATAATAGAATTGAAAC # Left flank : TTTGTGGAGAACATGGAGGAGAGCCCTCTTCTGTTAAATTCTGCCATCGTATAGGACTCAATTATGTTTCTTGTTCTCCTTTCCGTGTGCCTTTAGCTCGTGTTGCAGCGGCTCAAGCAGCAGTGGAAGAAAATAAGTAATTGAAGTGTAACTAATAAACCTCTTTGAAAAGAGGGAAATGTTTAGAAAAGAGGGCTTATATCTAACGTGTAAGCCCTCTTTCTGTTACTATGTCATTAAAGTATCCTTTCTTACGGACTTCACATAGATATCTGATAGTCTTTCATCCTGTGTAGCTGCATGAAAGGATACTGTCCTACAAAAGTGTGTAAGCCCCGTAGCTCTTAACTTTTTCGGACACTACCCATGAAGAAACTTGAGTTGTCGAACCTCCAGTATTTTTATAGAATTAGCCGTCGACGCTTTTTCATTAGAAGAAACAACACCATAATCATCGAAGCCCTCTTTATTTACATTACTTTTTTCTTGTAACTTTGCGG # Right flank : AATAAGACTTAGATAGAGTCTGATAACGAAGTATTACTACATAAAACTATTTCTACTACACGAGAACAATCTATTTCCTTTAAGAATACCGCTACAATACCTCTCCTCTTCTCTCCAAGAAAAAGATTAGATTATGCAGAAAAATGGTTACTTTTGCCCCTGCGGAATTGTCTGCCTTTCCATTAAGAAAAGAAGAGCATTCTTTTCTAAGAAAGAGTGCTCATAATCAAATAAAAATCAGTTACTGGTATATACTATGCTTAGAGAAATCTTATCTATTTCGGGTCGTCCTGGATTATTCAAACTTCTTTCACATACAAAAGGCTCTATCATTGTAGAGTCTTTGACTGATGGCCGTCGTACACCTGTTTATGCGAGTGATCGTGTAGTCTCTCTTGCCGAAGTAGCCATCTACACTACAGAACAGGAAAAACCCTTAGGAGAAGTTTTAGATCTTATATATAAACATACTGAAGGTAAAGAAGTAGACCTGAAAGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAATCGCACTATAATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 18561-18259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIJQ010000011.1 Porphyromonas circumdentaria strain DSM 103022 Ga0373368_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 18560 33 100.0 33 ................................. TTCGGTCTCTTGAATATGCGCTAATCGCTCTGA 18494 33 100.0 34 ................................. TCACTCGTACAAGTGTAATCCGCAACAACAAGAT 18427 33 100.0 35 ................................. CAGTGCTTTCGCTCAAAGACTTTCTTCCCGTTACA 18359 33 100.0 35 ................................. CTGTACTTTCGTATTAGCTCGTCTGTTAGGTCTAT 18291 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 100.0 34 GTCGCAACCCGCTCGGGTTGCGTGAATTGAAAC # Left flank : TATATTCCTTATACAATAGCGACCTATGTATATCCTTATCACATACGATGTGGCAACCTCCAGTTCTTTCGGAGAGAAAAGACTTCGGCAAGTAGCCCGAATCTGCCAAAACTACGGACAACGAGTACAGAACTCCGTATTTGAGTGCCTCGTAGATCCTGCACAGTTTGTGTTACTCAAGCATCAACTTCTCTCTACTATGGACGATAGTGTAGATAGCTTAAGGATTTACCGTCTGGGAAAAAACTATCAAGCCCACATAGAAAGTTATGGCAAACCAACATCATTTGAAATTGAGGGGGAATTAATCATTTAAATCCCTCATATAACTTCTGCGAACCCAAAGTACACAGAAAAAAGCCGCGGTGTCGCAGTCATTATAAATCAACACATTATAGTTGATATGACAAGAAAAACAAGCATACGTTCTTTGACATATTTAATGATTCGCATTTTAACCTCTCTAACTCGGCTAAATTGTGTACATTTGTGGGTGTACT # Right flank : TGGAAAGAAACATTTGAGAGGAGCAGTTAGCCTATACAACCGTCCTTGTGAGTCTTGACCAGAGCCGATTTAGAAGAGCTAAAACACTTTAACTCTCCTAGGTTTGGCTTTTATTTTTTTGATAGAATATAAAAAGAAAAAGGTGCTATCAGTGAGCTTCCAACCAATTAGCTCCCGTGCCGATTTCTACCTCCAACGGCACCCGTAATCCCTCTATCGCATGTGCCATTTCGTAACGCACCAAATCGGTAAGAGCTTCTATTTCGGAGCGATGCGCGTCGAAGTTCAATTCATCGTGCACTTGGAGTATCATACGACTTTTCATTTGCTTCTCTCTGAGGGCTCGATCGATACGTACCATCGCTATTTTTATCAAGTCGGCAGCTGTCCCCTGTATCGGTGCATTAACCGCATTGCGCTCTGCAAATGAGCGTACCGTAGCGGTGCGACTATTGATATCGGGCAAGTAACGGCGACGCCCCATTATCGTCTCGGCATAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGCTCGGGTTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 56603-58325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIJQ010000009.1 Porphyromonas circumdentaria strain DSM 103022 Ga0373368_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56603 30 100.0 34 .............................. TTCTTGTAGTATTTAGCAAGATTTTCGACAATGA 56667 30 100.0 35 .............................. GGGTTGGGACTTGTGTTAAGAGAAGTAAAAGATAC 56732 30 100.0 35 .............................. CCTTTTGACAATAACTTTACAGAGACTTATATAAG 56797 30 100.0 36 .............................. TCTCTAAGTGTGTTACATACACATCTTTAGGGTACC 56863 30 100.0 35 .............................. CGCGAAGCGCGGAGCGAAAAAAATGTTCTGCCTCT 56928 30 100.0 36 .............................. TAAACTTCAATCATGATTATTTCATGGGGTGTTTTA 56994 30 100.0 37 .............................. GATATAAGCATGACTATGTATGTTCTTTCTTTCTTAA 57061 30 100.0 35 .............................. TGTTAATCCTTTCTGCGTGTTTCTTAGCTATATCA 57126 30 100.0 34 .............................. CTATTGAGGCTATCTCTAAGAAGCTTGTCGATGA 57190 30 100.0 36 .............................. TTGCAGACCCCCTCTACTGCTATTTATGACGGCATG 57256 30 100.0 34 .............................. CTCTTGACCTTTCAACCGCTTCAGCTATCTATAT 57320 30 100.0 34 .............................. TAAGCATAGATACAGACTTCTGTATCGCAAGAGT 57384 30 100.0 35 .............................. TGATTTAGTTGTAATGGTAGGGAAGTTTGTAGGGC 57449 30 100.0 35 .............................. AAGCGATTGTGTAATTCGAGTACTAAATTCTTGTA 57514 30 100.0 37 .............................. CGAGTTTGATAAAAGACTTGGAGGGCTCGGGGCGATA 57581 30 100.0 34 .............................. ATTATGTAGCCATGCTCTTTTACTTCGAGGTTAA 57645 30 100.0 34 .............................. CTAACCCTCGCTCGTTACAGCGAGTTTACAATAA 57709 30 100.0 34 .............................. ATATGCCTTAAAAGGAAGCGCGGCTATACGCTTG 57773 30 100.0 35 .............................. AAAATCCTCTGACATAAAATTACCGCAACATAAGT 57838 30 100.0 36 .............................. TCCTTAATAAACATGAGATAAGAAGGTTTGACATAC 57904 30 100.0 34 .............................. TCAAGGCTCGCCTGCTGGTAAGATTGCGAACAAT 57968 30 100.0 35 .............................. TTTTGCAATGTGTCAAAATGGCAATAGCGCGCTTC 58033 30 100.0 36 .............................. TGTTCCCTCAAACCCCGTAGGAGCAGAAGAGGTAGA 58099 30 100.0 37 .............................. GACTTTGGGCTGCTGGGTATCCCTTTATTTTTAGGTG 58166 30 100.0 36 .............................. CCTAAAAGCGCGAGATGGACGGATGTTACCAGGATT 58232 30 100.0 34 .............................. GGATTGAAGCGGAAGAGCTCTTCCCGCCCCTCTG 58296 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 35 GTACTAATCGCACTATAATAGAATTGAAAC # Left flank : AGCGTGCTCCTTTAAGCCCTTGTATTCCTCCCGAAGAAGTTTATTTTTTGCCGACATTTCAACGGATTACCTATAAAAACATGTCAGTCTTCCACTTCTCTGTAACGGAAAGAAGACGCATCCTAAACTATCTTCTCACCTATTACTCTCTGCATTTTGCCCATGTAGGACAGCTTTCCTCTCCCGAGGTTTTATCTCTCTTATAGTAGAGATGAAACAACACTCTCCTCCGCTAAAAAATTGCTTCTCGGGCTAAAACATCAATTTCTCGAGGCACTTTTTTATACAAGAACTGTATGTAAGTTTGCCAGAAATAATAGAGATTTCTGACATTGTTGGGAAGTCCAATGCTAATTTGCTATTCTCAAATAGGATTTAAAGTTGTCGAATCTCAAGCATTTTCATAGAATTAGATATCGACGATTTTTCACTAAGAGAAACAACACTTTTTTCTTTTAAAGCCCTTGTATTTTCGTCTTTTTTTCTTGTAACTTTGCGGG # Right flank : CAGTGAGGGAGAATAGATTATAATTCCCCTTTGAGACCAGTAGCTATTAGCAATAGCCCTAAAAAAGGTGTAACTGCAAGGCAAATCCTAGCTCTAACAAAAGATAAAAGGGCGTTTTTGTGTTGAGTATCGCACTGTTGTTGCATAGAGGTTGCACACCCCAAGCCCCGCTTAAGCCCCCAAAAAAGCGCATACTACGATGGGGAAGAAAATAGTAATCGAAAAAAAACCTACTTCCTAACTCTGAAACAAAATCCATTTGCACTTCCCCCCAAGGGCTCAAAAAATTCCAATAGATAGAGAAACCACAAGCCAACCTCTTTAGCATCAAATAGGATCTTACAGTTTCAAGTCCGAAAAACAACGAGGGCTCCCTAACATTAGTTTTATGGGTAAAAAATCCTGCTGTAGCTCCCAACGAACCCAAAGAAGCAGAATCTCTATCGTACAAATAAGAGAAACTCAGAGATGAACGAACAGTACTGACACACCCACTCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAATCGCACTATAATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //