Array 1 347580-348939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDMW01000011.1 Listeria monocytogenes strain Lm115 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347580 36 100.0 30 .................................... ACGTATTTTGAAATCTGGATGGCATTTTCA 347646 36 100.0 30 .................................... TCCGCTTAGCCGATGAAATTCCAAGCAATA 347712 36 100.0 30 .................................... TTTATTCACCGGACAAGAAACGACCTCGTC 347778 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347844 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347910 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 347976 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348042 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348109 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348175 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348241 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348307 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348373 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348439 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348505 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348571 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 348637 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 348703 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 348769 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 348835 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 348901 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [348926,348932,348935] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //