Array 1 839643-839851 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOD01000001.1 Zymomonas mobilis strain NRRL B-4492 Ga0314519_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 839643 28 100.0 33 ............................ CTGATCGGCAATATTCGACGGATCAACAGGCTG 839704 28 100.0 32 ............................ CGCCATAGAATTGCAGAATTTGTCGGACACAA 839764 28 100.0 32 ............................ TGAATACTGTCAAAGCTAACGGATTGAAATCA 839824 28 85.7 0 .....................A.CA..T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCGACATCAGGAGAAATAGCCAATATATTTCTAGGGTATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGACCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAATAACTTAAAAGCAAGCCTATTTTTTAGGGTTATTTTGCCTATTTGGCCTAATATCCCTTTATTTTAGGGATAATTTTATAAATCTCTTCTA # Right flank : TTATCAAAACCGATGCCAATCATACCCTTAGATGCGACCTTCGAGACAAAAACATTTAAAAACAATTACTTAACCACAAAAACATTAAACCCTTAGAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTACCGGCTGAGGGAAAACGATTTCACCCTGCCGATATCTCCTAAATTTATCCCCCGAATAAATACATCCTGCTATAATAGGACTGTTGTCAGCTACGCCCTCGACACAACCGTTTTATATCAAAACATCCTTTTCGCTTTATCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGACGCGAAACCGCTATATTACGCCTTCGCAGACTGGCGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1098805-1098294 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOD01000001.1 Zymomonas mobilis strain NRRL B-4492 Ga0314519_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1098804 28 100.0 34 ............................ GGCTTACGAATTTTGGACAGGAGACCGGCGTAAT 1098742 28 100.0 32 ............................ TATCCAGTCAGCGACAATTCCAGCTGATTTAC 1098682 28 100.0 32 ............................ TGATAAAAAATGGTTCTTACCGAGTGACTCAC 1098622 28 100.0 33 ............................ ACAGCTTCTCGGCATGGTGCCGCAGAACGGGTC 1098561 28 96.4 33 ........T................... AGTCGATCAGACCAGCTCCGACATCAAGATGCA 1098500 28 100.0 32 ............................ AGCTGCCCGACAGCGAATGCCGATATATTTAT 1098440 28 100.0 32 ............................ GCATTTGTCTTTTCCAATTTTGCTATAGCTTG 1098380 28 100.0 32 ............................ TGATTGATCTGAAGGTATTGTCCGACTTTTAC 1098320 27 78.6 0 .............T...T..G..-.T.C | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCTGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGGTTTAAAAGAGGGGGTCCGAAAAAAGGCTCCCTTTTTTATTGAGGATTATTGACGAGAAGTAAGTTGTAAGCGGCCAATTTTAGGATTTTTTCTATTCTAAAGGTCGAGATTAAAAGGTCTATTCCTTTTGCAGATGAGACAGTTAGAATGAGGCCTTTATTGGTCAATCGGAATAATTATGATGGGTGGAATCTGGGGTAAATAAATAACCTCGTTTCATTCTTGCTATACTTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTGCATTTGACCCTCTTTTTTAGGCATGTAAAAAAATCCTGTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCCATTTTTGCCCGATATGCCTTGCATTTAGGGGGATTTTTAATTATTTGCTCTA # Right flank : TTAATTTATGTGTTGTTCTGTTTCATGGTTGGGGGGTGTTTTATCGGAGGCTATTCGGTTCTCAAAATATGTCGCCGGCACTTCTTTTTCTTCTCTGTCTTTTTTTTAGCTATTCCGACCAGAATAAAATCATCTGTAGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTCATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1428726-1428519 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOD01000001.1 Zymomonas mobilis strain NRRL B-4492 Ga0314519_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1428725 28 100.0 32 ............................ ATAAATTGCAAGCTGATAGTGTTGAACAGATT 1428665 28 100.0 32 ............................ AGCATCGCGCCACAGAAGAAGATCAAGCGTGT 1428605 28 100.0 31 ............................ ACTGACAAACTGGAAATGCCGAACGCGACAA 1428546 28 75.0 0 .............G...T..T...AGGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGCTGTATATTTTTGCAGCATAACCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCGGCCTTTGTAAGCCATTTTCACCACGAATAATCAGCGATATCCTATTTTCTGACATTGGTAGATTGTCCTCATCCTTATAGCCGAGTTAAGGCATTTAGGTGGATGTGTTTAATTTTCAGCCTTAGCATAGCGAGGATAGAGAAGAATAAAGGCTATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAACGGGGTGTATTAGCCTTGCGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTTAATTCAATATGTTACCTATAGGCCTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTATTGCCTCTA # Right flank : CTTTCACGTTATTTAGAAAATAAGATACACATCCTTACTCCAATAAAAAGAGCATAGGCTGAATGCCTCTATCGTCAATTTTAGGAAGTTCTTAGGAATGGTTTTCTTTATAGTCGTGGCAACAATTGTTATCGGCGGTCTGTTTTACTATTTAGAGCCTTCTTTGCAGCAACAGAAACAAAAGATCAAAGCGCATATAAGGAGGTTAATGAGGCCTAGCTATATGATCGCTGGATTCCTGTGTCTTTTAGCGGCTGTGATCACAGCTTTTGGCCTTGTTCACAGCCTTTCTTGGGGGCAAATGGGTAAGATATCTTTATTATCGGTTACAGGAATTTACTTTTTGCATATGGCCTATCGCCTCCCAAGATAGAGAGATTTATGCGTTGCCGGATAGGTGGGGGTAAAATTCAGGTGGTTTTAAAGAGGGCATGAAGCCCTCTTTTTTTAAGGTTTTTATTGAAAAAACGGTTTATTTTTTATTTAGGATTAGTCTTCTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //