Array 1 31627-32568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071130.1 Caballeronia sp. M1242 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31627 28 96.4 33 .........................A.. ACGCTTGCTGCCGAGCACGACGACGAGCGCCGC 31688 28 100.0 33 ............................ GGCGACCGGCGAATACGACGAAGCGAACTGGTA 31749 28 96.4 33 ................T........... CGAATACGTGATCAGCCAGCAACAGCGGGACTG 31810 28 96.4 33 ..............A............. CGGCGGAGTCAAGACGCAGACACAAGGGGCCAA 31871 28 96.4 33 ...........C................ CTCGAGCCAGGCCGGCTCGTCCAGTTGTTCGAG 31932 28 96.4 33 ...........A................ CGACGCGCACGGTGCGATCGGCGCCGAAATGGC 31993 28 89.3 33 ..........GC...C............ CACCGATGGAAGGGAAGACATCGGCCTGATGCA 32054 28 92.9 33 ..........T......T.......... CGCATCGTGCGGACTAATCGGCATTACGCCGCA 32115 27 96.4 33 .......-.................... CTGGACACCACCGCGCCAGATCGTAGATGAGCC 32175 28 92.9 33 ...G.......................T CGTGGCGGGCGGCATGCTGAGTGCCGGTTGGCC 32236 28 92.9 33 T...........C............... TTTCACGCAGTAATACTTCGCGTGATCGACCAC 32297 28 92.9 33 ............C............A.. CACCCTCTGGAATGCCTCCTCGTGCTGCCAGGG 32358 28 92.9 33 ...........AC............... CTACCAGTACACGATCACGAAACGCGGCTTGGA 32419 28 100.0 33 ............................ CCCGCAGAGCATGTTCGGCGACGGAACAGTAGC 32480 28 85.7 33 ..C........A...A.....C...... GTTCTTGCCGCTTGCTTTATCGCGTTCCTGCTT 32541 28 82.1 0 ..C........AC...........AC.. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 93.8 33 GGTTCCTCCGCGTACGCGGAGATAGGCC # Left flank : TCGACACGTCGCGCGTGCCGCGTGGAGATCGCCATGGGCTGCTGTGGCTGGAGCGCGGCGAACTCGGCGTCATCGACGGATGCCTGCATTTCACGAGCGGGCAATACGTTGATCAGATTCCGCATCAGTCGGTATCCATGGTTCTGCTCGGCCCCGGCGGCAGCGTAACGCATGACGCACTGCGGTTGCTTGCGCGCCACGGCACCCTGCTTGCCGCGGTTGGCGCGAGCGGCGTGCGCGGTTACACCGCGTTGCCGCTCATGCCGGATCGCTCGGATGTCGCGCGGCGGCAGGCCGAGCTGTGGGGCAGCGCGCGCCGACGCCTGGCCGTTGGGCGGCACATGTATGCGCTGCGGTTGGGCGAGGTGTTGCCGCATCGCGATCTGGATACGCTGCGCGGCATCGAAGGGGCGCGCGTGAAGACGATCTATCGGTTGCGCGCGCAGCAATTCGGCATCGATTGAAACGGACGGCACTCAATCATCGGGTTATGTGGGAGA # Right flank : CCCATCCGGCCAACCGCGCGGCGGTAACGATCCAGGCCCCTCCGCACACTCGGAGCCCACCCCCCATGACGCCCCCATTCCACCCCCATGACGCATTCCTTCTATGTCCCGGCTTTATGTCGGCGTCTACTGAAAAGACCTGCACCGAACCCAAGCGGTCACACACCGCATCGAGAGGAACCAAAAAATGTCCACCGCCACACAGCCCCGCGCGAGCGCCGCGGCGCGGCTCGAGCGCCTGCCGTTCTCGAGCTATCACCGCACCATCTTCATCATCATCGCGGTGGCCTTCTTCTTCGATTCCGTCGATCTCGGCACCATGACCTTCGTGCTCGGCTCGATCAAGACCGAGTTCGGCCTCTCGACGGCGACGGCGGGCCTCGTCGCCAGCGCGAGTTTCTTCGGCATGGTGCTGGGCGCGGCCGTCGCGGGCCTGCTTGCCGATCGCTTCGGCCGACGTCCCGTATTCCAGTGGAGCATGGTGCTCTGGGGCGTCGCGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTACGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 89286-86896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071130.1 Caballeronia sp. M1242 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 89285 28 96.4 32 ..........................G. AGTCGAGGCTTACGGCGCGGCTCTCTGCGAGC 89225 28 96.4 32 ..........................G. ATGAGAGGATCACGCCGTCAGTGAGACGCTGC 89165 28 96.4 32 ..........................G. ATACTCGCGCCGGAATGCGAGCCGGTCGTCCC 89105 28 100.0 32 ............................ TCCTGAAAAAGGAAAATCCGTGAAACTCAATT 89045 28 100.0 32 ............................ TTTGCCGAATGGCTCGCCATTGCGCTCGAGAT 88985 28 100.0 32 ............................ TGGATGTCTGCACGGATTCAAGATCTGGACAG 88925 28 96.4 32 .......................G.... AACGCAATGCGCGGCAATCTGCGCGCGGCGAA 88865 28 85.7 14 .......................C.CGC GCGGTAACACGCGA Deletion [88824] 88823 28 96.4 31 ...........................T CGTGGGCGTGATCCGCATCTTCCGCCATCAC 88764 28 100.0 32 ............................ GAGGCAGCGCCCCACGGTGGAGCAATCACCGC 88704 28 100.0 33 ............................ TCTACGTTCCATGGGACACCGACGCGAGTCCGA 88643 28 100.0 32 ............................ AACACCAGATGCTTTCATTGGTCCAATTCCGG 88583 28 100.0 32 ............................ TGCGGTCGCGACGGCGGTTCGCGCGGTCACGT 88523 28 96.4 32 ......C..................... TTGGAAGCGCAGCAGATCGCCGCCGATCGCGG 88463 28 100.0 32 ............................ GATCCGCTCGACGCCGAGGAGCAGGCGGCCGT 88403 28 100.0 32 ............................ TGTCCAAATATGATGCTGTGGTAGCTGCGGTG 88343 28 100.0 32 ............................ ATCGCGCGCGCATGAGCGGCCTAGCAGCGCCA 88283 28 100.0 32 ............................ TATCCGCATCATTTCCCCTCGTTACTAGCCAC 88223 28 100.0 33 ............................ GGGCAGATCAGCTATATGGGCGTGGAATCAGTA 88162 28 100.0 32 ............................ CGATCAAGTGCGCCACCCGCGCGCCGTGCGGC 88102 28 100.0 32 ............................ CCATCAAAGGCGCGCGGCGAGCTCGGCCGGCG 88042 28 96.4 33 ..........................G. TGCGAGATTGGAAAGCAGCGCGGCTCGTCTTTC 87981 28 100.0 32 ............................ TGTGTCCGTGCCGTCGGCTGTCATCCAGCCCG 87921 28 100.0 32 ............................ TGTGAACGCTTCGTAGCGCGCGGCAAGCTCAA 87861 28 100.0 33 ............................ AACGCTGTGGCAATCGGCGCTAACTCTGTCGCT 87800 27 92.9 32 ............-..............G ATGCGCAAGAGGTCATGCTCAACCTGTTCCTG 87741 28 100.0 32 ............................ TTGTTCGCGCAACGTCACGCGCGCAGAAGGAA 87681 28 100.0 32 ............................ AATCCGTGAGCGGTGCTTTTGGGTGGCCTAGA 87621 28 100.0 32 ............................ AGCTGATAGTAGAAAGCGTCTTTGCGCATCTG 87561 28 96.4 32 ....................G....... GATGGCGATCGTCACCGTTATCACGTTGCTGA 87501 28 96.4 32 .............C.............. GGCTTTTCCGCAGCCGTGATGCGGTACGCCTC 87441 28 100.0 32 ............................ GGGGCTCGCGTGAGGAAAGCCGACTCGCCACG 87381 27 96.4 32 ...............-............ TTCCGCCACAAGCCTCTCAGCGGGGTAGACGC 87322 28 100.0 32 ............................ CTGATCTGCTGGTCGGGTTCCGCGGCCGGACC 87262 28 92.9 32 ...........G.C.............. ATCGACTGGATATCGCACACTTTGTTCATGGG 87202 28 100.0 32 ............................ TAGGCATTGACGAGGCATTGCCTGAGCAAGAC 87142 28 89.3 32 .......................GA.G. TAGCGCCGGGCTGTGTAGCACGACGCTCAGCT 87082 28 96.4 70 .............C.............. GGTTCGAGGGCATCATCAAGGGGCCAAAGAACTAGAAATCGACGTACTCGCCGGTCGTGCGGATGCCACG 86984 28 100.0 32 ............................ GTAACGTTCCAGCGGTATGAGGGCGACGGCAA T [86961] 86923 28 89.3 0 ...............C......A....G | ========== ====== ====== ====== ============================ ====================================================================== ================== 40 28 97.8 33 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CGAACTGCAGTCGCTGATGGCTCAAGCTTGGCTGCAGGGCATGAGGGATCATGTGAAGGTCACGCGCTGCATGTCCGTCCCGCCGGATGCGGCGCATTGCGTCGTACAACGCCGGCAGTTCAAGACGAATGTCGAGCGGTTGCGGCGACGTCGTATGCGACGCAAGGGCGAATCGGCGGAGCAGGCTGCGGCTGCGATTCCGGACAGCGTCGAACGACGTCCGCATCTGCCGTATGTGCAACTCCGCAGTGCTAGTACGGGGCAGTCGTTTTGCCTGTTCGTGGAGCAGGTGGTATCGGCGTCTGGTGCGGTGGCGGGGACGTTCAACGCTTATGGGCTCAGTTGCGGCGGCAGCGTGCCCTGGTTTTAACCCTTTTTTGGGGGTTGAGGTCGGGGGCCTGAAGGATCAACGGGATACGATCTGTTCGGGGATTTGGGTAGTTTGGCCGAGTCTTCGCTAGTTTCCTTTTGAATCAGAGGGTTGCTGTCATTTGAGCCTA # Right flank : ACCCTGCAACCTGACTCCGCGTCGACCCGATAAGCGCCCTCGGCGAGCTTGCGAATCGTCAAAAGAAGCAATTCTCGGATATACGCGCTCACAATCCCTCTCCCCTCCCGAAGCACGTTCGCTCCCCGCGCACAGCGCCCCCAAGCAGGTCCCGCGTTTCGCTGCCGAATATCAGTGTATTTGGCTTAAACGCTTTCCCTGATTCCTCTCGAAAAACATCCCGCATAGCGTGTCGCCGTCGTGTCGAGCCGCTCTCAGCTCGAATGTTTACGGCGCGCGATAAAACTCGCTGCGCCAAGAGCAACAAAACAGCTTCCTAACTCAATAAAACCAACGCCGGCGAGTGGCTCCTCAGGCAGACTCTTAGAACAACCAAATGAATGATTGGCACCCCACCAATCCGGTCGAACGCCGCTTCATGGCCGTTCACGAAGACTGGATCGGTTTCGCAAGCGATCCGAAAGCGCGACTGCTCTACTGGCACACCAGCGAAAGCGATC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 100661-98407 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071130.1 Caballeronia sp. M1242 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 100660 28 100.0 32 ............................ TCGTCGAATGTTACGGCGCCGCGGTAGGCCAC 100600 28 100.0 33 ............................ CTACCGCAACCGCCTCGATGTTTTTCTCGATAA 100539 28 100.0 32 ............................ TAGCCGACCGCGATGCGGAAGCTTCGCGGCGC 100479 28 100.0 32 ............................ GTCGCGCGGGTCAGTCGTCATGCGTTGTCATC 100419 28 96.4 32 ........................C... AGGGAACGGGTTCGGGCGGCCTCGTGCTGCGC 100359 28 100.0 32 ............................ TCGACGAGCAGACCTTCGGCGTAAGCGAGCGG 100299 28 100.0 32 ............................ CTTTCCGACTCGGTCGACAACATCGAAGTGCT 100239 28 100.0 32 ............................ CGAGCGCAGGCCTTGCGCAAGCCCTGTCCGAC 100179 28 100.0 32 ............................ CTCGGACGGATCCGCCGTCGGATTGCCGTCCG 100119 28 100.0 32 ............................ TCTTCGCGCAGGCGGTCGAGGTGAGAGTTGCC 100059 28 100.0 32 ............................ CGCCGAACGTCCCCACGCCGAGCCGAAAGTCG 99999 28 100.0 33 ............................ AGATCGTGTCGCTCGCTGTCACCTGCATGACGC 99938 28 100.0 32 ............................ TGCGAGAATCTCCGCTTCCAGTGCCGTCGCCC 99878 28 100.0 32 ............................ GCCGCAGCTCGCGCGCCGAAAACGCCCTCGGC 99818 28 100.0 32 ............................ TGGTCCCTGGTGAGACTATCGTCGCAGTAGCA 99758 28 100.0 32 ............................ AATATCCAGCGCTTGAGACACCGCCCGCGCTC 99698 28 100.0 32 ............................ AATACGACACCTTCCGCGCGGAGATGATGATC 99638 28 100.0 33 ............................ ATCGCCTAGACGCTCAGCGTGTGGCGCGCCATA 99577 28 100.0 32 ............................ CCACCGCGCATCTTGCAGCGTGTCTTGCAAGC 99517 28 100.0 34 ............................ GTCGAACAACTCCTCGAAGGTTTCCACGATCAAC 99455 28 100.0 32 ............................ AGCAGACGACTGCCCGCGCGGATCGTTACGTG 99395 28 100.0 33 ............................ CAGACCATGACTGTCGTCAGTACGTCGTCCTGC 99334 28 100.0 32 ............................ AGCCGGGGCGGAGTCGTGATGTCAAACTCCGT 99274 28 100.0 32 ............................ TATGTGGCAAATCTTCAGATATCGCGCACGCT 99214 28 100.0 32 ............................ GATCAGGTGAAGCGGATCGTCGCCCCACCAGC 99154 28 100.0 32 ............................ GATTACTTTTACGAGAAGTACCAGGAGTGGCG 99094 28 96.4 32 ...............A............ CGTCGCGCCGATGCACCATTAATCCATGCGGC 99034 28 96.4 32 ................C........... TCGCCCTGCAAACGGCGGATGTGGATCTCGTC 98974 28 100.0 32 ............................ ACTGCGCAGCGTCGGCATCTTCCTGAAAACCT 98914 28 96.4 32 ..G......................... GTGCTCGGGTTGAGCATGACGAAGAGTGCCGT 98854 28 96.4 32 ..........C................. TCGTTGATCTTCGCCGACATCAGGGCCTTCGC 98794 28 100.0 32 ............................ ATCGACTGAATGTCGCTCAGCTTGTTCATGGG 98734 28 96.4 32 .............A.............. TTGATGCCGTACGGCGCGACGAGGTCGCGCGC 98674 28 100.0 33 ............................ ATTGCGCGATGCTGACCGATGGACGCGCCCGGA 98613 28 96.4 32 ...........................G CGCCGAATCACCGGTGTGCGCCGGGTCATATC 98553 28 96.4 32 ...................C........ ACTTGCCGTCCTCGATCTTGCGGCGGATCGCT 98493 28 92.9 32 ...............C........C... GCGTTGCAAGCCAGTTAGCAACGGTTCCTGCC 98433 27 67.9 0 A.C.........C-.CA.....A.T..C | ========== ====== ====== ====== ============================ ================================== ================== 38 28 98.2 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CACGCCAATTGGGCGTGATTGCTGGTTGATGAGTTAGGCGCGACGGGCGGTTTGTGTTGCACTGACTGCTGAGAGAGCCCTGGCTTCGGCCGGGGCTTTGTCGTTTGTGCGGTCGTGGTTCAGTTGTCTTGGCGCCGTCTGAAGCACGGCTCGCCGGTCATTACGTGCTGGTCGCCGCAGCGCCGGGACATCCGCGTCGATGATGCGTAAGCCGATCCTGCGCGGTACGGCGGTGGTTGTTCGCTTTCCACATTTGACCGTCCAGCGGCACGCTTTGACACGCAGTCGGTCATCGTGGATGTGTTGGCCGGCGACGTCGGTCGGTAAAATCGTGGGACCGGGTGCAGACGATGCGACGATTGCCGGTTAAGCCTTTTTTTCGTCGGGCTCCTTCTCGCCTTTTGAATCAAGGTCTTGCGATGGTGGCGGGGTTTTGGGTTATCTAGGTCTGGCGAGGGAAATGTCTCTTTGAATCAAAGTGTTCGCATGTTTTGTGTCTA # Right flank : CACCCGGAAAGACCATAAACAAACCCTCACCGCTCGCCCTCCTTGCGCCAGCGCAAAATTGACGATTCCCGAGTACGACAATCGATTACCCCTCTGCTAGAGTCGATCCCACAACGACCAATCAGACTCTTCACAAACATTCGAGGCAGCGTGGAATCGATACGGACTACGGACCTTAAGACCATCCTGCATTCAAAGCGCGCCAATCTGTACTACTTGGAACATTGCCGCGTACTCGTGAAGGGCGGACGCGTCGAATATGTGACTGACGCGGGTAAGAAAAGCCTCTATTGGAATATCCCGATCGCCAATACAACCAGTATCCTGCTCGGAACAGGCACGTCCGTCACGCAGGCGGCCATGCGCGAGCTCGCCAAGGCGGGAGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGCTCTTCAGCGCGAACGAGACTGACGTCGAAGTGGCGTGGATGTCGCCTCAAAGCGAATACCGGCCGACCGAGTATCTTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //