Array 1 2393068-2392641 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2393067 32 100.0 33 ................................ TAAATCGCTCTAGCAAGCTCACAGAACGATTCA 2393002 32 100.0 34 ................................ CTTAGCGCAACTACGATGCCAACCGTGGACGCTA 2392936 32 100.0 35 ................................ GCCTCCATTTGTAAAGGTAAACTCTTTACATACTC 2392869 32 100.0 33 ................................ TGTAATACATCTACTCCTGTAGTAAAAAATTGC 2392804 32 100.0 35 ................................ TGCTCTCTTTCTACCTTTCTATTGCGGATACCCTC 2392737 32 100.0 33 ................................ AAAGCGATAACAAGTGGCTTAAAGGACATCCAA 2392672 32 90.6 0 ...........A..........C.......C. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GCCGTAGCAAACCGGGAAGAATTGAAAGCGCTTCATATAAACCCAGCAGGGATTGCACCAGAAGAAGCAGAAACGGTTTTCAGGCATATACGTGACGATAGCGTCTTAATCAAGCAGGGATCAGGCCGATTTTCATACACATATCAAGCAAGGTTGGCAAAACAATAGCCGACACAACCTCATAGGGGAGAAGGGTGGTTAGAAGGGAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAGAAATGAGTAAAGTGAATCGGTTGATTAGGATAAACACGCTTGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAACAATATGTGTAATAATGGGTGAAATGATGTCCATATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTGCTGCCAATAAATAGGGGAATTTCGCT # Right flank : AACCGCCTATTGGATAACATGAAAGAAGCTGTTCCAGGTGAGGGAATGGACGGATAACGCCTGTTCCTGGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGTCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGCCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACGGCACTGTAAGTGGTAATAAAGTGGGAGATGTCATAGCCGCATTGTTGGACATATTCATGGACGGAACCGGCGGCAATTTCTTCTGTTAGATCAGGGAAATAGGAGCAGGGAAGCTGTGTCGTTTCAATTTGTACCTTTTGGTAATCGACGATCCGTACGCGTGTAAACTCCCATACAAAGTCGTTTTTCATATCAAATAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2411993-2411489 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 2411992 32 100.0 35 ................................ TTTTTAATTCCGCGGGCATCGGCATTTCTGACGAC 2411925 32 100.0 35 ................................ CTCGAACAAGGACTTGATTAAGCTTTGCGTCAAAC 2411858 32 100.0 32 ................................ CAAAAATCATATTGACCGTCCAGAAAAAAATT 2411794 32 100.0 34 ................................ CTGTTTCGTTGTCAACTCCAGTATACGTGCCAAC 2411728 32 100.0 40 ................................ CATTGTTTTTCCTCTTCCTCAATTTCGCTATCTGAGTAAC 2411656 32 96.9 33 ...........T.................... AATTTGGTTTGTAGAAAAAAGAGTGTGTTTTTT 2411591 32 90.6 40 ...........C..A........A........ AAGTAGTCATTTTCATTTTGCCACTCGAATTTTGTTTGTG 2411519 31 75.0 0 ...C......CC......CT..AA...-.... | ========== ====== ====== ====== ================================ ======================================== ================== 8 32 95.3 36 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CCAAACCGAAGCATGGAGTCTCGTTCACTTGGGGAAGGTGAGTTCATGGCTTTTATTAGTAATTGTTAGTTTCCTGATTGTTGCGACGTTAAAACAGGTGAAAGGGAAAAGATCCACTGGTGTAGATGCTAGTCAGTCTTTATAAAAAAAGCAGTGAGTGCTTTGTTATACGGAAGACACAGCCATTCTTCCTGTTTATTATAAAAGAAACATAGGTTGTATGAAGGCCAATAGATCGAAAAGAACGATATTAGAGAACAACATCAACAGGTTGTCTTCCTAATATTTAAAGAAACAGGGAACAAAGAAGCCGCATTTTTGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCAAAAAAGAGCCTAACTACGAAAAAATATGTGTTAAAATGGTAAAATGTTGTATATGTCCCATGGTATGATAGAGGGAAGAGCAACTTTTTCCTATTATTGGTTGTCTTTCTTCCAATGATTAGGAAAATTTTGCT # Right flank : CAACAAGCGCAGGAAGTAAATACCTAGATTAAAATGCCGCTTCACCGTAACGGACCAGGATTACACACGCTGGTCTATTTTTATCTCTAACAAATGACAAAATTAATTATTTGTCATTTGTTAGTTCTTTTGTTAGGCTAAGCAATAGCAGGGGGTGACTGAACACATCATGGGGAAAAAATCTTCGGAAGCATTAACAAAAGAGCAAATTCTGTCTGCTACGGAAGACGCGGTTAGGCGGTTTGGTATGGCCAAAACGTCGATAACGGATGTGGCTAAGTTATTGAACGTTAGTCATGGCACGATTTATCGGCATTTTAAAAGCAAAAAGGAGATTTTCGAAGCGGCTACTGCGATGTGGCTAAGCGAGAAGATTATGGAGCCGCTGTTGAATGTGTCACGTGATTCTTCTTTTAGAGGAGTCGACCATGTAAAAGCGTACGTCGAGAAATTGTTTGAGTTGAAGCGGTATTATGCTCGTAAAGATGAAGAATTATTTG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2416554-2415792 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2416553 32 100.0 36 ................................ ACAACGCGAAGAAACTTGTTATTAAGCCGACTGATC 2416485 32 100.0 34 ................................ ATGTCTTGTAGCGCCTTTCAAAAACAGTAATGTG 2416419 32 100.0 33 ................................ AGAGATAGAGCATGATTACTCAGAAATCGAGTT 2416354 32 100.0 33 ................................ AGAGATAGAGCATGATTACTCAGAAATCGAGTT 2416289 32 100.0 33 ................................ TTCCGTAACGTAAGTAACAGGTGACGGATCAAC 2416224 32 100.0 34 ................................ TAAAATCGTTAGAAGTTTATCTTTTTCCGCTTTC 2416158 32 100.0 35 ................................ AGTCATTAGAGCTTTAAGCCGTGAAGCACGTAAAC 2416091 32 100.0 35 ................................ TGTGTCCTACATCGATATAGTTAGTCGCCCCTGTG 2416024 32 100.0 36 ................................ AAGCATAAACCAGACGGTTACGGCGAGGACTACTAT 2415956 32 100.0 35 ................................ GATGAAGCACATAAAGACTTGGTTGACTACATAAC 2415889 32 100.0 34 ................................ TGTCACTAGACGTCCTGTCCTCGCATAGTTTTCG 2415823 32 75.0 0 .........T.CA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 97.9 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TAATAAGCGATTACTCGATCATTTGGCTCCATTGTTTTGATCATGTTTTCTGCTTTTTCTTTGAGTTTATTTGCTTGATCTACAGAACGTGCAATAATACACTTATACCACTCAGCAATTATCGTGCTTACTTCTTCTGGAGATAAAATAGCAGACATAAAGTTCTCCCCTCCTTAAATAAAGACTTCATAGAATTTTTTAAAATTATACTAGAAAATAGAGAAACATGTAATAGATTTAAAAATTTCCCAATATACAAATGGCTAATATATGTGAATAAACGGTAAAAACCTTGTTTTAGAAACAGCGTCGCAATTGTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATGACCCGCACCAAAAAAGAGCTTGAATATGTGTTAATGTGTGAAACAGTGGTAAAATGTTGTTGGTGTCCCATGGTATTATATAGGAGAAGAGCGGTTTTTCTCTATTATTCATTAATTGCTTTCCAATAAATAGGGGAATTTCGCT # Right flank : CTCACCACCACTGCTCCTGAAGGAAATGCACAGTTGTAGAGGTACTGGAAAAATAAGGTCTTCGTGGTGATGGTAGAACAACAGCTCATAGCTTTGACAGTACATGTCTACCTTTACAGCGATTATGAAAGTGACTTCCAAATATTCACCATTGGTTCGTCTGGGACGGCGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGATTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCCGCTTTGAGACATGAATCGAATCGAAAATGGTATGGTCTTGTAATGAATGTTCTTCCAGAAAAATTAGGGTTGGATGGTAATGACGAAATAGACATTCTGAATTTAAAATGTCTCCCTGAAATAAGTGGCAGTTTAAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2419229-2418342 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2419228 32 93.8 34 .........C.T.................... TAGCGATCTGGCCGAGAGGTTTAAAAATAGCGAT 2419162 32 100.0 36 ................................ GACGGCGTCAAGCTGCCGACGGTAAAGCCGTTTATG 2419094 32 100.0 36 ................................ AACTCTTTTCCGTACTCTGCCGCGAAGGAAAGATCT 2419026 32 100.0 34 ................................ ACAACGCGAAGAAACTTGTTATTAAGCCGACTGA 2418960 32 100.0 33 ................................ TTAGAGCCGTAAGGAACTCCGACTTTTACGCGA 2418895 32 100.0 31 ................................ GTTTTTTTCGCAATCCTTCTGTTGATCTACC 2418832 32 100.0 33 ................................ ACCGAAGCGACCGAATCAGTCAAGCCGATTGGT 2418767 32 100.0 33 ................................ CTTCTTTATCAAAATAGCGTGTTTGCCATTTTG 2418702 32 100.0 36 ................................ CTTAGTCATGATTCCGCAATTAATACATGTCAGAGT 2418634 32 100.0 33 ................................ GCCTATTTTTGATGAAATAGGGAAAGTGTTTTC 2418569 32 100.0 33 ................................ TGCATATACCTGGATGACCAACAGCCTTTCCTC 2418504 32 100.0 34 ................................ GGGTTGCAAGATATTGTCACTTATAGCGAGTTAG 2418438 32 100.0 33 ................................ GGTCGAGACTTATACAAACTCGCAACTTAAATC 2418373 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GCGAAAGAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACAGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTCCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTCCTTACGCCAACAGGAGTTTTTTAATGAAATATAGTAAAGTAGAAAGCAGAGCAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTAGTATTTTAAGCCGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCATCAAAAAAAAGCTTGAATATGTGTTAATGTGTGAAACAGTGGCAAAATGTTGTTGGCGTCACATGGTATTATAGAGGAGAAGAGCAGTTTTCCTCTATTATTCATTAATTGCTTTCCAATAAATAGGGGAATTTCGCT # Right flank : GCGCTTGTTTCTTTGTTTATTAGATTCTCATAGTGTCGCATGACTTTTTAAAACCCGATTAGAATTAGGCTAATTAAGCACTTAGGTGAGAATTAATTAAGGAACGAAAACAAAAAAATTCATAGTTTTAAAAATAAAAAACGCACTTCTAGAAAAGTGCGTCTAAAAAACAAAGATATTTATTTTTTCCTCAAGGGTTGTAAAATTATTTTCTCTTTGATTAATGACCCGTATCTGCTTTATCTCGAGTTTCAATCATCGAAGAATCACGATCAATTACGGCATTTGTTTGGAGGGTAAAAGAAACACACAGTAATGCTGTAAATAGGGAAAATAATATTTTTTTCAAGGTTCATCGACTCCTATGTTTGATAGATTTTTGCGTGCATGATAGGCAACGTTTAAATACTTCCACGCTAGTTCTTGTTTCCCTTTTTGTTTAAAAAACGTTGCTGCTTCCTCTGCAATCTCCTCGATTTCAAAGTTCATATCCGACTCAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2426872-2426444 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2426871 32 100.0 34 ................................ ACGGAGCATGGTCGGCAGTAGACCGGGCATTATT 2426805 32 96.9 34 ....................T........... AACTTGATCCTCGCCGAGCCAGTGGTCAACGCCA 2426739 32 100.0 35 ................................ GTCGGAAAGGCTACGAAACTTTATGCAGGATTTTA 2426672 32 100.0 34 ................................ CGAGATTAATTGCGTAAAATGGGTCTGCTTTATA 2426606 32 100.0 34 ................................ GTCGATATGCTGGACGCGCCACAGCCGCGGCTCC 2426540 32 100.0 33 ................................ ATAGATGGTTTCTTTATCTCCAACGACTTCGAT 2426475 32 96.9 0 ......T......................... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : AAGAAGAAGAGGAAGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAGTATGATGAATCTCCTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGGTAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGCACTCAAATATGGTTGAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATAGAGGAAAAGAGCGATTTTTCTCTATGATTCATCCATTAGTTTCCAAAAAATAGGGGAATTTCGCG # Right flank : ATGCCTTGAGACTTTGCCCCCTGGGTTAGAGAGCCCCTATGCGCTGTTTCCACATCCATCTTGAGGTGAAATTGTCCTTTTTTCTGGAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGCCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGCACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTGATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCCAATACAAGTTTTGTTGCTGAAAGGGATGGAACACTTATCGGCTTCCTAATCGGATTCTTTTCTCAATCCCATCAAAAAGTAGCCTATATACATTTCGTTGGGGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATCGATTTTTTCATGTGGTTCAGCAAAACGGGCGAAATATTGTTCGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2449501-2447773 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQR01000001.1 Alkalihalobacillus clausii strain J26TS2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2449500 29 100.0 36 ............................. GAAAAACAATACAACAAACAACGAGATGAAACAGCT 2449435 29 100.0 37 ............................. TTCACTTCGTTACAGTCAGACATTTACCGTTGACAGA 2449369 29 100.0 37 ............................. ACTTCTACAAGTAATCGTCTCACCGTTCGCATTTCCC 2449303 29 100.0 36 ............................. GTGGTAGTCACGTAGCGCCTGTTCGATGTCGTTTCT 2449238 29 100.0 36 ............................. GTACGGAACCGAGTATGCCATTTTAAGCCCATCTCA 2449173 29 100.0 37 ............................. TTGCTCCATATCACTTAGTTCTTGGTCTGTGACTTGC 2449107 29 100.0 38 ............................. TCGTGAGCCTTTCTACTGGACGGAGAGCCGAGAGTTGG 2449040 29 100.0 37 ............................. CAAGAATAAAAGAGGCTACAAAGCTAGAAGTCATTGA 2448974 29 100.0 37 ............................. GCGATATTTTAAAAGACACGCCAGCCGCGCCGCAACT 2448908 29 100.0 35 ............................. AGTCGTCCACCTCCGCGATTCGTATTAATATCTGT 2448844 29 100.0 38 ............................. TAAGACGGAAGGAGTGCGAACAATGGGGCGCATGGATT 2448777 29 100.0 35 ............................. AGGAACGCCAGGTCGATAAAGGTTGCGACCCCTTC 2448713 29 100.0 36 ............................. GCGTCACTGAGGCGGATCTCCACGATTGGGTCGCCG 2448648 29 100.0 37 ............................. TGGAAGAATGGTTCGGCCCTAAAAAAGATTAATTTAT 2448582 29 100.0 37 ............................. TCGCCTACAAGCATGATACTTAACCCAAATGGGTAAC 2448516 29 100.0 36 ............................. TTGCTCTCTATTGTCTATTTTTACTTTTGACTTGAC 2448451 29 100.0 36 ............................. CACAGGACAACAAAGTCTCAAGTTGGGCTAGGCAAT 2448386 29 100.0 36 ............................. CAGTCCGTAAAGTCTTCGAGCAGAGCGTCTAGTTGC 2448321 29 100.0 37 ............................. TGAATGCCAAACTTTCTTTTTATCTCTCTGACATCGC 2448255 29 100.0 37 ............................. CGGCCGACATCGGCTAAGCCCCCTTTACCGTCTTTCC 2448189 29 100.0 38 ............................. ATTACAAAGCATATTGAGGTGGCAAAACGAGATTGGGG 2448122 29 100.0 36 ............................. TTGTCTGTTCTAGCTCCTTTTCTAAAATGCTGATAA 2448057 29 100.0 36 ............................. TTTTCCGTCATCGCTGAAAAGAACTCGTAGAAGGCC 2447992 29 100.0 37 ............................. CCCGCTTAGGTACCGGGCGGGAAGTTTCTCCGAAAGC 2447926 29 96.6 36 ............................T AAATGACATTCATCGTGTTCTGGAATTCGGGAGCGA 2447861 29 96.6 31 ................A............ AAGAAACCAAGCTAATCTGAAGTCACTAAGC 2447801 29 75.9 0 .G...........CA..A...G....GG. | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 98.9 36 GTTTTATATGAACTTAGTGGGTTATAAAG # Left flank : CAAGCCATTGAAAGCGTGGTGGTAACATGTTTGTCATTATAACGTACGATGTCGGCCAAAAGCGAGTTGGAAAAGTATGCAAAACGCTGCGAAAATATCTGGACTGGACCCAAAACTCCGTATTTGAAGGAGAGATAACAAAAGGAACATTAAGTAAATGTATGGCTGAACTCGATACCATTATCAAAAGAGAGTCAGACTCTATCTATTTATATCAGGTTGCCAATCCAAGAAATTTAAAGAAGATTATCCATGGCCATGAGAGAAACCCTTCCGACTTGTTTTTATAAATGATAAAATGAGACGAAACATTCACAGTTTGCCGTGAATCGGTTTTGATGTAAAATGAGCGAATCGCTTGCCCCTTAAGGGATTCAAGCTATTTTGAAGTGATTCTAAATACACGACTGGCGATCCACTGCAAAATGAAGACATTTGATAGGACAGGCAATCGTGAAAAAGCCCGTTGTTTTAAGGTTTTTTGTTGGCTAAAATGAAGG # Right flank : GATTAAAATAAAATTAGTAGTATCGAAAGGAGCATACCTGTTAGAAGGGGTTGAAACAAAAAGAGCCCCTAGGGAGGATGTGGAGTGTCTGGAGTGTCAACGAGCAAGAATTGGAGTAAATTCGTGCCCTTACAATCATGACGAGCGGGTTAAACCCTTTTACACGTTCAGGCGACGATGGTCCGCCATCACAAGACTAATAATAAAACTGACTGGCCTCTAGCTGAACTTGGCTTATTTCCTCGAAGACCGTGGCATTCTGTTGGTGATGGGGAACCCGATGCATGTTTCGAAGTCCAAAGGAGCTCGACGATAAGCTTCAAGGTAAAGCACGATGTCAAAGATGCGCGAACGATTGGTCTTCTCGTTAAAGACAGGCGCTTTAGTTACCTGCGTATCCTTCAGAGCCATGAAGCGGATTTGTGGACGGAATCAAACCTTCGAGTGTCATTAACGGAAGACTTGGAAACGAGCACAACAAAAAAATGAACCCCGTCCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //