Array 1 37191-35623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOV01000016.1 Methanosarcina sp. 2.H.A.1B.4 scaffold23_1_size56218-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37190 37 100.0 35 ..................................... TCTATTGGGGTGTTGTAGAAGTACATTAGCTGGCC 37118 37 100.0 34 ..................................... AAAACAAGCGAAGATATTGAGAGTGCCGTGACTC 37047 37 100.0 37 ..................................... ATAAATGCCTTGCCTGCAATGTCATATCTTATCCCAG 36973 37 100.0 34 ..................................... AAGATAAAATGTACTTTAGAAACGGTGCTCATTT 36902 37 100.0 35 ..................................... ACAGTCTCTTAGTTTTTGTATCTTTTCATTCATGT 36830 37 100.0 37 ..................................... TTAATCATGTATCCTCAAAAAATTGTATGAGTAATAT 36756 37 100.0 35 ..................................... TTCCTTTCATCTGAAATCGTCATGAGCTTCTCTTG 36684 37 100.0 36 ..................................... TGTCTGTCGGAACGATGTACGAACTTTTCTTGAACA 36611 37 100.0 37 ..................................... TGAGTGTGTCAACGCTCAAAACTCAGTTCTCCGCAGC 36537 37 100.0 35 ..................................... ACTATCCGGGTCTTGCAAGCCATATCATGCGGAAG 36465 37 100.0 35 ..................................... ACGGTACGTTAGAGCGCGAAGTGCTTACGAGAGAA 36393 37 100.0 36 ..................................... ATATTATCAAGAGCAATTTTAATACCCTTTAAGATA 36320 37 100.0 37 ..................................... AATACTTCTTTCTCTTCTGGAGAAGGTGCAGCACATG 36246 37 100.0 35 ..................................... TACCCCTGATTCAGCACCTTGTCGGTGTTTCCTGG 36174 37 100.0 37 ..................................... ACGCTTGCGGATGGTGGGGTATGTTGTGCTGATGAAG 36100 37 100.0 39 ..................................... TGAGAGGCATCACGCCCGCCCGGATCCCGGCCCACAAGA 36024 37 100.0 34 ..................................... GCCAATGCACGAAAATTAAGCATAAACGCTTAAT 35953 37 100.0 37 ..................................... TACATTTCAAACACTCCAAAATTAAAGCTTATTCACT 35879 37 100.0 37 ..................................... ACGTCTGTTAACATGTCTAGAAAAACTCCATAACGTA 35805 37 100.0 36 ..................................... TTGACAACGCCGAAATGAATAGTAACATTGAGGATG 35732 37 100.0 36 ..................................... TACTCTTGATAAATGATATACAACGGCTAACCGATA 35659 37 97.3 0 ........G............................ | ========== ====== ====== ====== ===================================== ======================================= ================== 22 37 99.9 36 ATTCGCGAACAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATATTATTTCATTATTAACTGGAATCGTTATTTCTATTGAAGCACACATAATTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTCTATTTTCTACATTATATTTTCTACATTCTATTTTCTACATTATATTTTCTACATTATATTTTTTAGTCAGTTTTTATAGAATTCCATACCAGACGGTTGTTGGTGGAATATAATGTTTACTCTTTATAGTGGGCTTTGCGTTGGATTGATCATTGATTATTAACATGAGCCGATAATAAAAAACAAAAGTTTAATAGAAAGAAAAGCATATGTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAAGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : TCTTCCTGTATTTCCATTATCCCGACAATGCCTCTGTCGAGAAGTAGCTTCCATAAAAAATGCTAAAACCAAAACCTAAAATAACCCCCAAAGTAATTATTTACAAGGGAGAATAGTCATGACCAGCGAAACCGAAACTCCGGAATGTTGCCCTCGATTTGACCCCGCCCCCTGGGATGGAAAACTCTTTGAATGGAAAAATAAAAGGTTCATCAAGGATTCCGTTACCACTCAGCATTACATGCCTATAAACTTTGGAGATGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACTGGCTCTGTCTGTCGGACCATACCTCCGAAAGCAATATGGATCTCTATCTGGCTGTTGACAGAGAGGTTGAGGGGGCTGAAAACGTAACCCTGAGTGGGAAGTTTTTGAGCAAAGTGTACGAGGGAAGTTTTGAAAAAACAGGGGAATGGTGTGCGGACTTTGAAGGCTATGTAAAAGGCAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAACAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 9667-6175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOV01000045.1 Methanosarcina sp. 2.H.A.1B.4 scaffold35_1_size39257-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 9666 32 100.0 35 ................................ TTAATAATGACCGCTATGAAGGTGTAGCTGAAGTT 9599 32 100.0 33 ................................ CTTCATACGTCCTCGATCTTTCTTTCCACCTAT 9534 32 100.0 35 ................................ ATCAATCCGAAGGGCATTCTAAGCAGATTAGAGAG 9467 32 100.0 35 ................................ TGAACTGGTAAGATTAAATCTCTCCAACATCAGAT 9400 32 100.0 36 ................................ TGGCTCAATTTAATAAGATATTTGAGGTGGAATAAT 9332 32 100.0 34 ................................ TTAACAATGACCGCTATGAAGGTGTAGCTGAAGT 9266 32 100.0 35 ................................ TGCTTATGCCTGTTCTGTTTTCATAAATAGAGAAT 9199 32 100.0 35 ................................ GAGGACAGTTTAAAAGACTCAATGAAGAACCTGCT 9132 32 100.0 35 ................................ AATGAATGAATCTACTCTCTGAAATGCTTGATCTT 9065 32 100.0 33 ................................ AAAAGGATTTAACAAGATCGCTGAAAAACAAAT 9000 32 100.0 36 ................................ TTGCATGTTGCACCATGATAAAGAGGCTTTATTCCC 8932 32 100.0 34 ................................ AACTTGGGAGGAGTGATTTAAACGGCTTTTGAAG 8866 32 100.0 34 ................................ ATAACTTATGACCGTAGCGTCAAAATAAAAGGTA 8800 32 100.0 33 ................................ ACCGATGAATGGACCGGAGAAATCAAAGATAAG 8735 32 100.0 32 ................................ CAGAAAACCCGACCATCATATGATGTCGAAGT 8671 32 100.0 36 ................................ GAGATTAACCCTCATTGACCTTACAAGATCCATGTT 8603 32 100.0 34 ................................ TTCATATGAAGACAAATCTCAGGATATTACAATA 8537 32 100.0 35 ................................ ATTTGCACTCGGGGTATATCCAAACATATTATGGA 8470 32 100.0 34 ................................ GTTTATTGGTGCATTCCTGGCGTTAATTTCAGCG 8404 32 100.0 35 ................................ GGAATGGTTCATTAGTACGTTTACAGATTTCCCTT 8337 32 100.0 36 ................................ CTCCCAGGACTCCCACTTTGTTATAAGTGGTATGGC 8269 32 100.0 34 ................................ AATTTCATATCTATACAACCAATGGAGAAGTCTG 8203 32 100.0 33 ................................ TTCTTCAGACATTGCCGGTCTTGCAGGCCCCTC 8138 32 100.0 35 ................................ TTTTCTCCAATTCATCTATTTTATCACAATATCTC 8071 32 100.0 35 ................................ CTGTAGAATCTAACCATATCGCTCTTAATCCAGTA 8004 32 100.0 37 ................................ TTACACACATGCAGCCCAATACATCAAAATGCCTGAG 7935 32 100.0 35 ................................ CTTCTGCCCTGACGGGAAAGCCAGATATTTTTAAC 7868 32 100.0 35 ................................ ACTTGCATCTGTCTTTACTATCCTGAAATCTCCTG 7801 32 100.0 34 ................................ AAATTATGGACGGTAGAAAATGCGTTCTAAGAAT 7735 32 100.0 36 ................................ TCAAGGGGCTAGAGGAGGATAACCAAAGATGAGCAA 7667 32 100.0 38 ................................ GGTTAAAGTGTTTTTATGTGTATTCACTTTTCCAGAAT 7597 32 100.0 35 ................................ AGGAACTGTTTTAGTACTCCATACCGGAAATCCTC 7530 32 100.0 34 ................................ CTTGATGAAGCTCATGAATTTTGCCCGCACTTTA 7464 32 100.0 34 ................................ TACCCTGATGGGCTATACTGGTTTGAGGTAGAAA 7398 32 100.0 32 ................................ AAAATGATAACGCTGAAACAGCCGAATCAATG 7334 32 100.0 38 ................................ GTTTTTGCAGCTGGGGGAAAACTCCAGCTTACTCTAAA 7264 32 100.0 36 ................................ TAATTAGTGTTTTGAATGGGGCCGTTTATAAAAACG 7196 32 100.0 37 ................................ AAAGATGTGTAAAGCGCTTTCAGATAATGAACGGCAA 7127 32 100.0 34 ................................ AGTTAAGCCGGTGTAGTCAGTTGAGGGAAAAGTA 7061 32 100.0 35 ................................ AATCCTTAAACGGATACTACAAAATAAGGTATTTT 6994 32 100.0 34 ................................ TATCTGCTACCTCGGAAACGGGATATGCCTCGCA 6928 32 100.0 35 ................................ AAAAAATCAAGGTAGAAATTTAGCCTGTATATTTT 6861 32 100.0 34 ................................ TGTAGGCATCAATATCACCGTTAATGACATTCAG 6795 32 100.0 34 ................................ GTTAATGGACGCCATAGGCAAAGCAGATACATTT 6729 32 100.0 34 ................................ TTGTGGTTTGTACCCATCCTTCATGAGATTCGAG 6663 32 100.0 35 ................................ AAAAATGGATAGATGAGGGTTGCCCTTTAACTGAT 6596 32 100.0 34 ................................ CGTTTGAGGTCCCTATGATCGTGTTGTTGTAAAA 6530 32 100.0 33 ................................ ACAAACGACGTTACGGTTGTAAACGATATAAGC 6465 32 100.0 32 ................................ CCTGCAGGTACAGGACGAAGGACAAATCACTG 6401 30 93.8 34 .....................--......... CCATATCTACAGGATCAGAAATACAATGTAGATG 6337 31 90.6 33 ............A...-.....A......... ATTATAAGTTCCAGAATAAACATTGATAATATA 6273 31 81.2 36 ...A.G...A-.AA.................. GGTATATAGTAAAGAATCAATACGAAAAACAATATC 6206 32 93.8 0 ..............A................C | ========== ====== ====== ====== ================================ ====================================== ================== 53 32 99.2 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : ATATTGATGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTTAAGTGATGGTATTGGTAACATATGATGTGAGTACAGAATCCGAAGGTGGAAAAAGCAGACTGAGAAAAGTGGCAAAAGAGTGCGAAAATTACGGACAACGGGTTCAGAACTCTGTATTTGAGTGCCTTGTAGATCCTGTTCAATTTGCCCAGCTTAAACATTCTTTATGTGATATAATGAATGAGGAGAAAGATAGTATCAGATTTTATTATTTGGGTAAAAATTGGAAAAATCGGGTGGAGCACTTTGGTGCAAAAAAAGGGTACGATCCAGAAGGTTTATTAGTTGCCTGATCTCCGCGAACCCATAGTGAACATTGATTCATTGGGAGGTTCGCAGGAAAAATCAATTCATTATATTTATGTTTTGTGGCGATTTCCTGCTGGATGCAAGAACGTGAATTTTTAAAAAAAGAATATATATCACACGGTTGATACATTGTCTAAATTAATTTGCG # Right flank : TCGGCCTCGAACTTTGAGATCTCCAGGAACCAGTAGCCTTCCCTCAAGACCATTTCACTCTCCATGACCTTTATTTTGTTTTTGAACAGCGGGCCGTCGATAACAAAAGTATGGAACTCCCCGTTTTCACCGCAGGGATCGATTGAAGGATTGTGCTTATTCAGGTCGCATATAAAATTTTCATCGATCTTTCGGCCCAGCCACTCTTTCCCTAACAACCCGGCTTTAACGCTGAGCAGGATCACCTCAAAACCCGAATCTATGAGGCCATTTAGAATCTGTTCGGAATTTCTCTGCCAGAGCGGCATTATTAACTCAAGGTCCAGTTCTCCGCAGATCCTGTCTACAAGGTTCTTGTGCGTCTCGATATGCCCGAAAACCGCCCCGTCTATTTTCTCCCCGCTGTCCCTTAAATCACGGACCACTTTTTTGAATTCCTGTTCATATGAAATAAAGTCCTTATGGATAAGGGGAATTCCAAGAGCTTCAGCCTGTGCATA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58296-65951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOV01000033.1 Methanosarcina sp. 2.H.A.1B.4 scaffold8_1_size95506-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 58296 37 100.0 36 ..................................... TTATCCATATTCAACGTCTGAACAAATGAGAACCGG 58369 37 100.0 38 ..................................... GTCTCAATATAATAATTCAAAGAGTTCCCGGCAGAATC 58444 37 100.0 35 ..................................... AGAGCTTGAAGAGTACGATGGAATCCAGTACCAAA 58516 37 100.0 39 ..................................... ATAATAAGAAAATGAAACTCCTGAAACCCGACGCAACAA 58592 37 100.0 35 ..................................... CGATAACGGCAGCACTATCAATATTCTTCTCATTC 58664 37 100.0 35 ..................................... CTATTATCTGGGAAGAAGCTGGGGCTTCAGCTTAT 58736 37 100.0 35 ..................................... AAATCACGGATCTGCAATGATGGTGCAGAGGACAT 58808 37 100.0 36 ..................................... TATTTATTTTCTGTTTATAATCCTTTGATGTCTCTT 58881 37 100.0 39 ..................................... TTACTACTTTGAATCCTCCCGCTTTACCGGCTTTTCTTG 58957 37 100.0 37 ..................................... ATATATGCGCTCCGGGATTCCCTGAACATCTTTTCTA 59031 37 100.0 41 ..................................... AATAAGATGAGCGACAAAGAATTCAGAATCCTAAGATCAAA 59109 37 100.0 40 ..................................... ACAATAAACGGGATACAGCTTAAGAACGTTAAAGAATTTG 59186 37 100.0 41 ..................................... CCCTCGATTATTTTATATTGTGTTGTAGGAACTGTTGAAAA 59264 37 100.0 36 ..................................... TGATTCTGCGCCGACTGATGCGTATATTCGAGTCCA 59337 37 100.0 36 ..................................... CTCCTCAGTATGTCTCTTGCCACGGACGGCGGCATG 59410 37 100.0 38 ..................................... TAATTCAAATATACTTAGAGGACAATGAATCCACGTTG 59485 37 100.0 37 ..................................... CTTACTTACAAACTCAGGGGATCGGGACTATAGGAAC 59559 37 100.0 36 ..................................... GGGATATACCGGGCCCATTCGGGGAGGCCCTGGATA 59632 37 100.0 35 ..................................... GGGCAATTGGATTATAATATATGTTTGCGGCGGCA 59704 37 100.0 37 ..................................... CACTATACTCCTGTTATTGATCCTAACGCCGTCACCC 59778 37 100.0 38 ..................................... AGAATCAATCGAGCTATAGCCACTGAACTTGCAGGATA 59853 37 100.0 36 ..................................... AAAATTCCTGCAATTGTGATTAATGGAATTGAATTT 59926 37 100.0 47 ..................................... TTCAGGATCGGGGCGGCGGCGTCCGTTGTTTTATTGCAATTGGTTTG 60010 37 100.0 36 ..................................... TCTGCATGAGTTGAGGAATAAGTTAATCTGGATAAA 60083 37 100.0 35 ..................................... TGATAATCATTGACTTAAGGAGATGAATATGAAGA 60155 37 100.0 35 ..................................... TTAAAAACGATGGGGAAATATTGCCCTGGGTGCGA 60227 37 100.0 38 ..................................... CTGAGAACTGATTGGGGGACGCGCGGGCGAATTCGTCA 60302 37 100.0 36 ..................................... TCTGCATGAGTTGAGGAATAAGTTAATCTGGATAAA 60375 37 100.0 36 ..................................... TTGTATTGCCTCGTATTGATACGGAGGGATAAGTAC 60448 37 100.0 36 ..................................... GTGTATTGCCTCGTCTCTTGCAGAATACTTGTTTTG 60521 37 100.0 36 ..................................... TGCCTGGAAAAAGGATAGTGTTGTCCTAGTGTGCCT 60594 37 100.0 37 ..................................... CAATACAGGTCAGAAGGTATCCTCGGTAAAAACGAAA 60668 37 100.0 36 ..................................... TTTTCCACGAACATAAAAGCCGGATCAAATACAGAA 60741 37 100.0 36 ..................................... GATTGTAATGCAGTTTGAGGACGCAAAGAAAAGGTA 60814 37 100.0 36 ..................................... TGGACAGATGGAAAAGCAGTGTTGAAGGAGGCTTAA 60887 37 100.0 36 ..................................... TGTGCAGTCGGGATGGATTAGAAAATGGGCGAAATT 60960 37 100.0 37 ..................................... TTGGATAGTTATGCAGGTGGGTCATGGGTCCAGGATG 61034 37 100.0 36 ..................................... CACCTCCTCCGGGGTTCCCACTGCCGTTAATGGTAT 61107 37 100.0 36 ..................................... GATCATAATTGCCTTATCTATGACAGCAACAGGCCG 61180 37 100.0 35 ..................................... AGTAAAAAAACGTTTCCGTCACGTTTTGACGGGGA 61252 37 100.0 35 ..................................... CGGGCATAAACGGGCAAACTCCTATATCATGGAGG 61324 37 100.0 37 ..................................... AGTGTCTGTCAAAGACGGGGTCGATGTGGGAATTCTG 61398 37 100.0 37 ..................................... TTTTATAAGGTAAGGTATTCGACATTTTCAGGGGAAA 61472 37 100.0 37 ..................................... GACCCTTTCACAAACGGGTTTTCATATGCGCGTATCG 61546 37 100.0 38 ..................................... TTGAAATTTTAAAAAGGAGTCTTGAAAAATGCAATTTG 61621 37 100.0 38 ..................................... TATATCAAGTCCTTCATTATTTGAAATAGCGTTTATAC 61696 37 100.0 36 ..................................... TTTTCTGTTTCCTTCGCCTCTTCCAGCTTCTACTTT 61769 37 100.0 38 ..................................... ATCTGCTTTGATCTCCTGGGGCTTTTCTTTTGTTCATG 61844 37 100.0 34 ..................................... ATAAACTATGGCGTATTATTCATTCAAAGCAAAG 61915 37 100.0 37 ..................................... ATTCCACATAAGAGATGAATCAACGTATATTAAAATA 61989 37 100.0 34 ..................................... AATTCAGCTTTCCTGAATCTGGCTTCCAGGCTGA 62060 37 100.0 38 ..................................... TAAATCCCGTATTTCCGGCCCTCATTGCCTATTGCCTG 62135 37 100.0 37 ..................................... TAGACATTTGCTGTAAAGCTGGAGGCTGCTCTATGGG 62209 37 100.0 34 ..................................... TTATAATGGCCACTGAATCAAACACCCTCGCAGC 62280 37 100.0 38 ..................................... TTCTATGTCTTTGTCTGATGTCCAGGTCCGCAAAATTG 62355 37 100.0 34 ..................................... CAGTTCCAGGACGCTATTATTTTGTCCTCAAAAT 62426 37 100.0 35 ..................................... TGAGATTTGCCCCGGCAGTAATCAAGTCAAACCCT 62498 37 100.0 35 ..................................... CTTGCTTCGCGGTTGATGCCTGCGTTTGATGGGAG 62570 37 100.0 32 ..................................... GAAGTCCCGTTCTGATCGGTGACCGCCTTTTG 62639 37 100.0 37 ..................................... GTTGTATTGCGGATACATCCCCTGGTTGAGTACCCTG 62713 37 100.0 33 ..................................... GACATATTTTTCACCGGGGGAGACTTCGGGTAT 62783 37 100.0 37 ..................................... CCACTGATCCGGAGAGGAGTGAGGCTCCGTCGTGTTC 62857 37 100.0 33 ..................................... CTGCCTCTTAACATATGTAATTACATTATTTAG 62927 37 100.0 38 ..................................... TCCTACGTGAAAGTCAGAAGCCAGTACAGTTGTATCAG 63002 37 100.0 35 ..................................... CGAAAACAGAGACTTCTCCCAGCAAATGGATCAGG 63074 37 100.0 37 ..................................... TAAGTAATAGCATAGAGTACCATGTTACCACAAAAAG 63148 37 100.0 36 ..................................... AAAATCCTGTAATCTTTCAGATTTCAGGATTACAAA 63221 37 100.0 36 ..................................... TAAGTCCAACAAACCAGAGTTGAAACTATGGCAAGA 63294 37 100.0 36 ..................................... TGCCATAAAATTCAATCTGACTTGCTGCCATGTTTT 63367 37 100.0 36 ..................................... TAAGCATGGCTGGAAGTTCTGAACTTGCAGGCATAG 63440 37 100.0 34 ..................................... TTTTTTATATTTGGGTACATTAACTTTTACCTTT 63511 37 100.0 37 ..................................... AAACAGAAAAAACCGGAAACAATAGCCCCGGAGCCTG 63585 37 100.0 35 ..................................... TCGGCTTTTAATGTCTTCGGGCTCATCAAGATAAA 63657 37 100.0 37 ..................................... TGGAATTTGCAGTAAGTAGCGAATGGAACGAAGGCAC 63731 37 100.0 36 ..................................... TCGCAGAAAAAATGAGGTCCGCGAAACTTGCATCTG 63804 37 100.0 36 ..................................... GGTTCCTCATCTTAGTTTTTGAGAATCAAAAACCCT 63877 37 100.0 34 ..................................... AATACTTCAAAACTTGAAGAATACTGCACTCTGA 63948 37 100.0 38 ..................................... TTGACGGAGGCTCGCCCTAAATGCCTCGTAGTGTCAAA 64023 37 100.0 36 ..................................... AATTATATACAACAGCCGCCGCAAGTGATTTTTTAT 64096 37 100.0 37 ..................................... AGATGTGGCCGCTTTTGCTACAGATTCGTTATTAATC 64170 37 100.0 36 ..................................... CGCGGATTGTTTGTCTCTGTAGATTTACAAAGTTCA 64243 37 100.0 35 ..................................... CAGACATTGATTAATCAGAGGGATGCGCTTTTACG 64315 37 100.0 36 ..................................... TGTAGTATATGATTTCGTCTGCCAGTAATGGGTTGT 64388 37 100.0 39 ..................................... CAAACTTCGCAGCTATCTATGGAGGCACAAAGGCAATAG 64464 37 100.0 38 ..................................... CTCTCTCTTTCCGATGCAGTTCAGGCAGAATCGTTCTT 64539 37 100.0 34 ..................................... TCATTCCTCAAAGTGTCAAAAATACAATATTTTT 64610 37 100.0 34 ..................................... ACAATCTCACCTTTGAAGCAATCTTTTCAATTAG 64681 37 100.0 33 ..................................... TTGCTTTGGGTTTCGGGGCTACTTTGCTAACAG 64751 37 100.0 38 ..................................... ATAGTTGTCCATCCATCCAAGCGGGCCGCCTCTCATTG 64826 37 100.0 36 ..................................... CTGTGCTTGTAATGTAATCCCCTTCGAGTACTACCA 64899 37 100.0 35 ..................................... TTGTCGTCGCCAAGGGGCAACCTCCTATACAAAAA 64971 37 100.0 36 ..................................... TTATCAGTGACTACCTCACGGGCTGCAAATGTAATA 65044 37 100.0 37 ..................................... CCATCATTGGAAACGCCGTTGATGATTGCGCTGTCCT 65118 37 100.0 37 ..................................... GTTTGCCACGGGTGCTATGAGGTTCCCCGGCGGTTCG 65192 37 100.0 41 ..................................... TTTACGGCTCCGGCATCTCCAGATAATTTTAATACCGTCCC 65270 37 100.0 32 ..................................... TTCTATGTAATCATATAAATCGAAATAAAAAA 65339 37 100.0 37 ..................................... CTCTGTATTCCAGACCGCAGGACCAAGACAAGACAAT 65413 37 100.0 37 ..................................... AAAAAAATTTTTCAATAGGAGTTTATATAATGCCAGA 65487 37 100.0 33 ..................................... AGTTACGGGACTCCTGCTACAACGGTCTGTAAA 65557 37 100.0 32 ..................................... CCAGCCACTTGTAACGATCCCACCGACCCAAT 65626 37 100.0 37 ..................................... GATTCTCTACAGGCTTTAATAGAGCATCAGGTAGCAG 65700 37 100.0 34 ..................................... AGCTCCACAGGTATTTTGTCATCAAGATTGGTAT 65771 37 100.0 38 ..................................... TGCCCCGGTTTATATGGCCTATAGGCAAAAACAGGAAG 65846 37 100.0 32 ..................................... TATCCGCAGGAATCACAGAGAGCGCCGAAACG 65915 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 105 37 100.0 36 ATTGCAATTGGTTTGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTTATTTTAAGTATCAGGTCTCCCGCAGAAAAGCGGTCAGAATGCAAGCAATATTACTACGAAAAGCGATCACAAACGAACTTCCTATGTATTATCCTTTGGTGTTTAGACGATGAGACTCGCAGTCACGTACGATATAAGCGACAATAAAATCCGCAATAGGGTTTATAGAATTCTTGAAAAATATGGCGCATGGAAACAGTATAGCGTATTTGAACTTGATATAACTGCAGTGCAACGTGTGGAACTAGAAGATGAAATAAGAGCAGAAATTGAATCTACTGATAAAGTACGTATTTATAGTCTTTGTGACCGTTGCGTAAAGAATATTGTAGATATAGGTCAAAAAGGCCCAGATAAAAAATCGAACATTATTTGATAGTCTTTTACATCGATGTTTATATATTCTCTGTACGCAAGAGGTTTAGGAATCTATGTCTGATTTTTGAGGATTTAGAAAGGGTTATAATGAAAAAAGGCCCTTTTTCCCATGCC # Right flank : CTCCGGAATAGTCAAAAATCCATTAAAATAAGGATTGAACTAAAAGAACCACTGAGTTTCTCATTACAACCTCTTACTCGATATCAATTCCCGGACACTAAAGTGTATATCATCGCTCTAGCCGCTAGCCGTTTGGCCCTTTGCTTTTTTCCCGCCTGTTCGGTGCTGGTCGAGGAGCCAAAGGTGCAGGTACAGGTGAAGATCGGCTTGTTGGTCGGGCCTTCCATCTTAAATGAATAAGCTGGCAAGGGGAGTTTCTTTGCCTGACAATACTCCTGCAGGGCAAAAATCGGGTCTTTTGACGTGTTAATCGTCATTTCTTCCTTACTGGCCGGCGGATTTGCTATCGTGGCCTTCAGGTCCGGCGCGGGTAAGCCTGCAATGGCTGCGAGCAGGTCTACAGATGCCCGCTGCACGGCGCCTTTCTTTGTCACGTCCTCGTATGCGGCGGACCGGTACTCTCTATCACCGACTCTGGTGGCGCTCCGGGCAGTGAATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTGGTTTGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //