Array 1 74017-74839 **** Predicted by CRISPRDetect 2.4 *** >NZ_VADP01000126.1 Campylobacter coli strain MON361 1012500126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74017 36 80.6 29 AACCG.T......................G...... TACATTAAGTCGTAAAATTCTTTGCACGC 74082 36 100.0 30 .................................... TAATTACTTGGGAGAATGAATGAGTGCTGA 74148 36 100.0 30 .................................... ATGGCTTCAACTATAAGACACAATAGAGCT 74214 36 100.0 30 .................................... AAAATTGATACAGTTAATATTAACAATATG 74280 36 100.0 29 .................................... AGCTCATCGGTTGCACCAGAATAAACAGG 74345 36 100.0 30 .................................... AAAGATATAGCTATTAAGCAAGAGCCTAAG 74411 36 100.0 30 .................................... TTTAGATGTGTGTAAAATCGCTAAGACAAG 74477 36 100.0 30 .................................... AAAGAGGATATTTCTATCCTCATTCTCTCT 74543 36 100.0 28 .................................... TGATTATCGGTAGCACAACACTACAAAG 74607 36 100.0 30 .................................... TAATATGGATAATGAATTAGTAGAATTACA 74673 36 100.0 30 .................................... TCTACATGGAGTAATTTAATTCCTCCTATA 74739 36 100.0 29 .................................... ACCTGAAATGAGAGTAATAGACGATCAAA 74804 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTATATCCTGCTCATCTTTCACTTGCTAAGTCTTAATCATAAGCTTAAAAATGATTATTTTGCTAGAGTTGCCATAAACTGCGTGGCATTGTTTATTTTTATTTATGCGGGGGTTAATATTTCGATGACTATAGGTTTTGCACCGGTTGTCGGTATACCACTGCCTTTTTTTAGTTATGGTGGAAGTTCTTTTACAATTTTTATGATTTTCTTTGGAATTTTACAACATTTAATCACTTTTAGATATTTTTGGACAGATAATAAAAACAAATAAAATAACTTTAAGCAAAGATAAGATATAATTCTATCTTCACAAATCAAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCACTACTTTAGTTGTAGATATCTAATCCCAAAAAATGATTCAAATTAACTTTAACTACAAATAATCTATACCGTTTACTATCACCTTAAATTGAAATAGA # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //