Array 1 191983-193291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNJ01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001377 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191983 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 192044 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 192105 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 192166 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 192227 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 192288 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 192349 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 192410 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 192471 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 192532 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 192593 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 192654 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 192715 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 192776 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 192837 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 192898 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 192959 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 193020 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 193081 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 193142 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 193203 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 193264 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209913-212445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNJ01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001377 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209913 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 209974 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 210035 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 210096 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 210157 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 210218 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 210279 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 210340 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 210401 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 210462 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 210523 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 210584 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 210645 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 210706 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 210767 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 210828 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 210889 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 210950 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 211011 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 211072 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 211133 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 211194 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 211255 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 211316 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 211377 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 211438 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 211499 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 211560 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 211621 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 211682 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 211743 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 211804 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 211865 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 211926 29 93.1 33 ..........................A.C GCAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 211988 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212049 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212110 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212171 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212232 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212293 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212355 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212416 29 96.6 0 ............T................ | A [212443] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //