Array 1 36245-35223 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKES01000080.1 Campylobacter jejuni strain BCW_5913 619, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     36244	    36	  97.2	    30	T...................................	TGATTTATTAGTAACCCATCAAGTTGGCTT	
     36178	    36	 100.0	    30	....................................	GCACCTGTTTTTGATTGAACAAAACAACCA	
     36112	    36	 100.0	    30	....................................	GTATTTTGATACTCTGCTTCTTGGTCTTGA	
     36046	    36	 100.0	    30	....................................	TGCACTGAAATAAATGAGTTTATAGCAAAT	
     35980	    36	 100.0	    30	....................................	AGAAAAATCAAATTGTGTAACAGGGGTGTT	
     35914	    36	  97.2	    30	.........T..........................	TTTGCGACTTTCAATCTCTTTAATTGTTTG	
     35848	    36	 100.0	    30	....................................	AAATTACCTTTTGAATATATAAAAAAAGCA	
     35782	    36	 100.0	    29	....................................	GCATTGTTTATAATACTATCACTTGCTAA 	
     35717	    36	 100.0	    30	....................................	AGCTAAATTTTCATTAACTCTATTAATATA	
     35651	    36	 100.0	    30	....................................	GCATTGCTTTACTACATAGCCAGTCGTGTA	
     35585	    36	 100.0	    30	....................................	TCCCAACCCATAAAATAATAATAAATATCT	
     35519	    36	 100.0	    29	....................................	AGGTTATGGATATGGATATAGAAGATGCA 	
     35454	    36	 100.0	    30	....................................	AATAAATCGCTTGAAATTAATAGAGAGCAT	
     35388	    36	 100.0	    29	....................................	TTAATTATTTACTTGATAAAAGAGTTAAT 	
     35323	    36	 100.0	    29	....................................	TAAATTGAGTGTAGATTTAGTAAATAATC 	
     35258	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.7	    30	GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	                              	       

# Left flank :   AGATATAAAACCAGGAAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATTATCGCCTTACCCGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTATGCAAGAGAAATTTTAAATTCTTGGTTGCTTCAGCCTAAAGATTACATTTGTAAAGCCTTTTTACAAGGAAACTACAAGAAAAAAACGCCTTATTTGGAATTTGTTGCTTGTAATATAGAATTTAAAAACGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTAGTACCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCACCTCCTTTTAGTGAAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGG
# Right flank :  AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTCTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCTCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:77.78%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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