Array 1 180917-181604 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJGX01000011.1 Pseudomonas aeruginosa strain EPIC E197 NODE_11_length_229713_cov_181.892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 180917 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 180977 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 181037 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 181097 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 181157 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 181217 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 181277 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 181337 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 181397 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 181457 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 181517 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 181577 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGAGAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCAGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 191526-190478 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJGX01000011.1 Pseudomonas aeruginosa strain EPIC E197 NODE_11_length_229713_cov_181.892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 191525 28 100.0 32 ............................ GGACGGTTCCTTGACCAGGGTCACCAGGTCAC 191465 28 100.0 32 ............................ TTACAGCCGCCGGTAAGACCCGAGCCGCCAGT 191405 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 191345 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 191285 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 191225 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 191165 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 191105 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 191045 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 190985 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 190925 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 190865 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 190805 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 190745 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 190685 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 190625 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 190565 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 190505 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 209856-208749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJGX01000013.1 Pseudomonas aeruginosa strain EPIC E197 NODE_13_length_210119_cov_186.129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209855 28 100.0 32 ............................ TGGTCGTTGATGGCGTAGCCTGCTCCGAATTG 209795 28 100.0 31 ............................ CGCACGTGCGGAGGCGGGATATGGGCGGCCG 209736 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 209676 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 209616 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 209556 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 209496 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 209436 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 209376 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 209316 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 209256 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 209196 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 209136 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 209076 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 209016 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 208956 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 208896 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 208836 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 208776 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //