Array 1 26815-27263 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMHE01000052.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26815 28 100.0 32 ............................ CGTGGCTGACGATGCAGACCGGTCACCCGTGG 26875 28 100.0 32 ............................ AGTCATGGGATGCAGATCCGAAACGGAGGAAA 26935 28 100.0 32 ............................ ATGATTTCCGCCGCCTCTCCAGACACGTCAAT 26995 28 100.0 32 ............................ GGACAGCGTGGAAATGCTCATGCGCAGCAGAG 27055 28 100.0 32 ............................ TGAAAGTGGCGAAGAGTATAGGTACTGCTGAT 27115 28 100.0 32 ............................ GCCGGCAGTGTCGCTATATTTTTCTCAAATAA 27175 28 100.0 32 ............................ TCTATCCATTTGTTTTTCCGCTCTACGCCGTC 27235 27 78.6 0 A..........C.C.........-..CC | GG [27255] ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTCACGGAAATCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCGGCGCTAGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCCTTTTTTTTCGCCTTGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGTTTTCCAGGGAAAAACCCGCTTTCCCTTTCAAAATCAGTCAATAGGCGATAAATTGCTACG # Right flank : CGGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCACCTGAACCTCTCCTTGTCGTGCGTGCGACGAAGTTGCAAAGAGAATATCGTGGTCATCACGCACGAAACATTTCACTGCACTGACATCTATTCGCTAATCAATAACAAAACAACCCTGCTGTTTATCAACAGCCCCTCGCAGCAGCGATTAACCCTTATTCCGCCGTCAGTGCCGACACCGCCCCTTTTCGCTTTTTGATGGCATAGCCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 875-186 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMHE01000053.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 874 28 100.0 32 ............................ GGCCTGTGCGGACGCGCCCATGTGCCCGCCGA 814 28 100.0 32 ............................ AACAGAAAGCCTCCAATGATATTCACGGGTAA 754 28 100.0 32 ............................ CATTTCAACAATGGTTCTTACGTCCCTGTCAT 694 28 100.0 32 ............................ GTTAAGGACAACGAAAAGCTTCCTCCCACAAC 634 28 100.0 32 ............................ CCGCCGCCCTGTCATAAGCCGTCAGTCTTTCT 574 28 100.0 32 ............................ ACGAAATTGATAGCTGAGCTGACGATATTCGT 514 28 100.0 32 ............................ AACCTGGCGCAGAAATCGGAAAACCGTATCGC 454 28 100.0 32 ............................ GCCCCACCCCTGCCTGTAGTGCCTGATGCAAT 394 28 100.0 32 ............................ TAGCTTCATGAGGCTGCGCTCTGCTGATGATA 334 28 100.0 33 ............................ CGGCAGATTCGCACGGACTAACGCTTCGGCGAA 273 28 100.0 32 ............................ AGGGCAGCAATGATGGCATGAGTAATGTATTT 213 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGTTGCAGCAAGGCGGCGACGCAGCGAATCCTCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATCAACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCACCGCCATACCCTTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACG # Right flank : AGTGAGGGACCGTCCGGCACAGCATACACGCTGGTTCACTGCCGCACAGGCAGTATCCCTCCCCGCCGGGGAGGGAGTACGTCGGTCAGAACGACGTCCAGTCGTCATTGGTGCCGGCGGTGGCGGCGGCACGTTTTTCGGTTACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9572-10080 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMHE01000053.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9572 28 100.0 32 ............................ CGATGGAAGGCGAAGAGGAGCAGGATTTCCGT 9632 28 100.0 32 ............................ ATCACTTTCTGCCCCTCAGCGTTACTCAGAGC 9692 28 100.0 32 ............................ TACCCGCCGAAGCAGAAACAAGCCTAAACCAA 9752 28 100.0 32 ............................ CGCGTCGCCGCCAGCGCCACCGCTGAATGTCT 9812 28 96.4 32 ...........T................ AAACGCGGACAGCGCCTGACTCCACGCCCCAT 9872 28 100.0 32 ............................ ATATCAGGCCATAAAAATGTTGCGCAGACAGC 9932 28 100.0 32 ............................ GGGCGCGAAAATCTGATGTTGTGCGGATTGCC 9992 28 96.4 32 ...........A................ ATACCGATTGGGCCACCCCACGATCCTTATGT 10052 27 82.1 0 ............AC.........-..CC | GG [10073] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGACTGCGCGATTATACCGTCATCACCGAAGCGCTGCCGGTGCCGGCGGGCGTGAAGTACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGGCTGCGCCGTCGCGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACTGTCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGACGATTTTTCTTTAGCAATCAGTTGATAAGCGAATGTTCGCTACG # Right flank : GGTTTGCTGGCGTTAAAAACTACACTGAGGTGGGGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCAAGCCCCAGGTATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //