Array 1 122900-122322 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFU01000012.1 Bifidobacterium breve MCC 1454 M1454_012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 122899 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 122833 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 122765 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGAAAATCTACTA GG [122749] 122695 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 122628 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 122559 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 122491 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 122423 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 122354 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GCCTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACATCCCGCCACC # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2821-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFU01000006.1 Bifidobacterium breve MCC 1454 M1454_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 2820 33 100.0 35 ................................. AAAAACGGTTTCAAGCAGTCGGCGAACGATTTCAG 2752 33 100.0 34 ................................. CTTTGCTCCACTGAATGAAGAGGGAGAATCCCAG 2685 33 100.0 34 ................................. ACGCTTTAACCGATAGAGGAGAAAAAATATTATG 2618 33 100.0 35 ................................. GGTTATGCGCCTGAATATGCTCAAATAACACGCCT 2550 33 100.0 35 ................................. TTCGAGTGTCTTGAGCGGAGCCTGTTTCCCTTCCG 2482 33 100.0 34 ................................. TACCTGTCGATGATGCTCGACGTTCCCGTGCCGC 2415 33 100.0 34 ................................. CCTGAAGCTGCTTCATCAGCGAATCGTCAAGCAG 2348 33 100.0 35 ................................. AAAAGCGTGGCGATGATGCTCACCCAGACGGCTGG 2280 33 100.0 33 ................................. TCGCCACCACACCTGGGGCATGGCGAACACCGC 2214 33 100.0 36 ................................. TTGTCCGCGCCGTAGGTGCCCTCGCGCACCAGGTAG 2145 33 100.0 33 ................................. CGGCCGGCGCGGCGACGAGTTCGCCCTTCGCAT 2079 33 100.0 34 ................................. CCGCACAGCCATTTCTCCGCGACAGCCTGCCCCG 2012 33 100.0 35 ................................. ATTTTGAACTTTGGCAGGAAGATGATGAAGGCCGG 1944 33 100.0 34 ................................. CAGTAGTTGAGGTTGGCGGCGTCGTGGAGCATGC 1877 33 100.0 34 ................................. CAGCAGGGCAGCAAACGGCGGGTGTCAACGTAAT 1810 33 100.0 35 ................................. ATCTGCATCAAATCACTCGGCGAAGTAACCTTCAT 1742 33 100.0 35 ................................. CTGGTACCACGCCAAGAGCTGGGCCATGACACGGC 1674 33 100.0 33 ................................. CGCTTTGATTTGCGGTGTTTCAAAACGTAACCG 1608 33 100.0 35 ................................. ACGTGAAACGTTTGGAGGAACCACCGACTTGGAAA 1540 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGAC 1474 33 100.0 62 ................................. TTGAATATGTGTACGGTGATTGCGATTTTGATTATGGTCGCTCCCCATCCGGTTTGATTATG 1379 33 100.0 33 ................................. CATGCTTGGGTCATCATTGCGCCGGCCGGTCTG 1313 33 100.0 34 ................................. TGGTTATCGAGCCACAGGGGTTCCGCGGAAGTGG 1246 33 100.0 36 ................................. GTCCAGCACCACGGTGAACGTGTCGGGCAACACCAC 1177 33 100.0 33 ................................. CACGACTTGCGTGACCGCGTCCACCTTGTTGTC 1111 33 97.0 33 ............A.................... TGACTGGGAGGGTCAGTCCGGAGGCGACCCTTT 1045 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 977 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 909 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 840 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 773 33 100.0 35 ................................. GCCGCCTATGACGGCGGCATGCGGCCAGCGGCGAA 705 33 100.0 34 ................................. AAAGCCACCGAAGAAAAGGAGAAGTAAATCATGG 638 33 100.0 35 ................................. ATTCTGGCAAAGGGCTCTCTGACCCCGATCGCGTT 570 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 501 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 433 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 365 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 299 33 100.0 35 ................................. TCCTTGACTAGATGGATTGGTTAACAATTGATTGG 231 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 165 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 96 33 97.0 0 ..........C...................... | ========== ====== ====== ====== ================================= ============================================================== ================== 41 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2039-1402 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFU01000005.1 Bifidobacterium breve MCC 1454 M1454_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2038 28 100.0 33 ............................ TTTCCGCCGTAATCCGATTCCGCGTGCGGAATC 1977 28 100.0 33 ............................ GAAAATTAACCCAATTAAACCAATTGTTCCTCA 1916 28 100.0 33 ............................ TGAGGACATGGACACTTTGGATTGTCGAGTCAC 1855 28 100.0 33 ............................ CTATTCAGAAAATGCGATGTGGTCGGTAGGGAA 1794 28 100.0 33 ............................ CGAATCCCAGGGCCATCACGGCCGTGGTCCGGG 1733 28 100.0 32 ............................ CGTGGGAGCAGACCAACCCCGCCTATAGGGTG 1673 28 100.0 33 ............................ TGGAATCGAACTCATCATTTCCAATCCCTGCTT 1612 28 100.0 33 ............................ CTGGGAACACACGCAAGACAAACGCGACCTGAG 1551 28 96.4 33 .............A.............. TTTGGGTGGAATCGTCTCCGCCGGTGGTGTTTT 1490 28 100.0 33 ............................ TAGGCGACGGGCTCGACCTGAAACAGATCGAAT 1429 28 96.4 0 .T.......................... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 33 ACCTACCCCGCAGGCGCGGGGATAAACC # Left flank : CCGATCCGAAAGCCGCCAAATGGTCGTTGAACGGCATGGACTATCGAGGCTACGCGAAACCAACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCAAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAACACGACATTCCCCTGGATCACGCCCTATTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTGCGACGCGACTGGAGCCGACTGCTCAACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGTAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGGTGAAAACTAAACT # Right flank : GATGGTTGACTTCCTCCCGGTGCTAAAGCATCGGGATTCCGACATCATTGTGGTGCCGGTGGTTCGCGGTCATTGACGCTCCGGAAAAAGTTGACGGCCTGCTCGTGGGTGTGTTGCGTTGGCTCAGATACATGTTATACTGAATATGTCCACATAAATAATTGAAAGAGGAAAAAATGAACACCAACACCCTTGAGCAGTCCCAAGACACCACCGCCATCGAGACAATCCGCGAACAGCTCAAAGCGAAGAAACGCGGGCAAGCAGTCCGCGAACTCGCCACCCCACTGCTTCAAGCATGGACGAACGCCATCGAAGGCAACAATCCCAATCTTGACGATCTCACCGGTCTACCCGAGCTCATGTCCGAAGTGCTCAGCGTCAGGGACGCGGCAATCATCGCCGCCATCAACCCGCAGCTCAGCATGAACACCATCATCGATATCGCGGCGAACCCGGACGCCCCGTATTCAAAGGATATACTCAACCAGACACTGCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 186674-185731 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFU01000005.1 Bifidobacterium breve MCC 1454 M1454_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 186673 28 100.0 33 ............................ CGAAGCAACGGAACCGTTCTATGAAGAAGCTGA 186612 28 100.0 33 ............................ CATCATCACGGCGAATATCTGACAAGACTTTGT 186551 28 100.0 33 ............................ CCAGAGGGGCAACGTGGCGGTCGACAACTACAC 186490 28 100.0 33 ............................ TCATCCGCTATCTCACCCAAAGCGAATGGCTCA 186429 28 100.0 34 ............................ AGTCGGCATGCTTGATAATCTCATCACGCTGGTA 186367 28 100.0 33 ............................ GCTGACGCCGAGGAGAAACAGATCAAGGAACTG 186306 28 100.0 33 ............................ GAACGGGGAATGGTACACCACACTGCCATTGCA 186245 28 100.0 33 ............................ GATTCTGCCGATCGACATTCCGTCGAGCAGGAC 186184 28 100.0 33 ............................ CATTCCCGTGCCCAATATGATCATAGGGGAAAA 186123 28 100.0 32 ............................ GTGCCTAAGCATTGGGATTTCAGGTCATGCGG 186063 28 100.0 33 ............................ TCTTGGCGACGATGGCACACGCCACCAGTGCAG 186002 28 96.4 33 ..............C............. CGTGCCGTCACGGATATGACCCGCATCAGCGGA 185941 28 100.0 33 ............................ GGTCAAACAACGTCCAGTACTGTACATGGCGCT 185880 28 92.9 33 .............GC............. GGGGACGGGAAAGACAGTCCTGCGAATCATATG 185819 28 89.3 33 ............TGC............. CCGGCGTTCATACACCATCGGCATATCGACATG 185758 28 92.9 0 .........A....C............. | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.2 33 ATCTACCCCGCACATGCGGGGATAAACC # Left flank : CGAATGCGAGACATGATGCAGGACGGGAAATTATTGGAACGCTGCGTGCATGATGTTTCCACTCTGCTCTCGGAAACACCTGTGGAAGAAGACTCCTGCTCCGTCTGGACCGGCGGACAACGATACGGGAAAGCTGGACAATCATGGGTACCGTAGTAATCCGACTCGAATGCGCCCCATCGGGGCTCCGAGGCAAACTTTCCCTGTGGATGATAGAAATCAGCAGCGGCGTATATATCGGAGATATCAACTGCCGAATACGTACACGATTGTGGCGACGGATACTCTCGGAGCTCGGCGACGGTCGAGCCACAATGGCTTGGTATACTCAACACCGATTGCATGCCTGCAATCGCAACGGCAAGAAATCAGTAGCAGGACAAGATGGAATGCTCCTAATGTCCAGTCCTTTAAAACCCAAGGACAATCCCTCTGTAAAACAGATATGAAATTTGCATAAAAAGCCCTTGTATGGCATTGAGAACGTTGAAAACTAAACT # Right flank : TAAACCGGTTTGGCTGGTGTTGCGCATTAATATAGATATACTATACTGAATATGTCCACATAGAATAATCGAAGAGGAAACATGAACAGGCAAACCATCACCTCATACCTCAACCATTACTTCGCCTACTGCGAGCAAACCCCCGCAGGCTGGGACACCGAAATACTCACAGACTTCGTAGACCAGCATCAGGAGAAGTGAGAACCGTGAACCATCCCGATCAGCTCAGCCAATCCTACGCCGCGATACTCCCCGCGTTGAAAGACCTCGGCTATCGAGCCGACGTGAAAGCCAACATCGACGACGAACGCTTCATCGTCACCGTCGGAGGAAAACCCACCGTCCGCGTCTACAGCGATGGCGGTTGGAAACGAGACGACGGCCCCGAGGGGAACAACCCCGGCGAACTGCTCCGCTTCTACCGGCATGAACACTATCTGGAAGCGTTGAAACACTGGGAAACCGGAAACTGGCGTGGCATCGCCCGCGACCTGCTCATC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACATGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //