Array 1 108103-106138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWK010000002.1 Salmonella enterica strain 1961 NODE_2_length_580515_cov_196.556747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108102 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108041 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107980 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107919 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107858 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107797 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107736 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107674 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107613 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107552 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107491 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107369 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107308 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107247 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107186 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107125 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107064 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106942 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106881 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106819 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106716 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106655 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106594 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106533 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106472 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106411 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106228 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106167 29 96.6 0 A............................ | A [106140] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125727-124234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWK010000002.1 Salmonella enterica strain 1961 NODE_2_length_580515_cov_196.556747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125726 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125665 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125604 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125543 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125482 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125421 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125360 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125299 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125238 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125177 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125116 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125055 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124994 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124933 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124872 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124811 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124749 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124688 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124627 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124566 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124505 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124444 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124383 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124322 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124261 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //