Array 1 639783-636780 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTPB01000004.1 Actinomyces mediterranea strain Marseille-P3257T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 639782 36 91.9 40 ...A.....T-.......................... CATCGATAGGGATACCCAGGTGTATTGGTGGCTCGAAACG GC,G,G [639774,639777,639781] 639702 37 100.0 40 ..................................... CACCAAGACCGCGAAAACCATCACCGTCACGATCACACCC 639625 37 100.0 34 ..................................... TCAGACTCGTATCCGCCTGATCGGCGGCTCTGGT 639554 37 100.0 39 ..................................... AGGCCAAGGCAATGATTCGTACCATCCGAGAGACAACGT 639478 37 100.0 35 ..................................... GTATAAACTGGGCGCTGTTGATTCTGATACTGATT 639406 37 100.0 37 ..................................... TATTCAGTGATGCGATTGTTGCAGCACTTATCGCAGC 639332 37 100.0 37 ..................................... GCACCGTACACTCCCTGGGGTGATGTATGCGACGAGC 639258 37 100.0 38 ..................................... TTCAAGCGAGACAAAGCGGCCGCTTGCTGTTTTGCACA 639183 37 100.0 37 ..................................... AGGCTAGCGTAGTCGCCTCGAAAGCGTTTTCTTTGAT 639109 37 100.0 37 ..................................... GGATGAGAAAACAGGCGAATGCTTTGTTCGACATCAT 639035 37 100.0 35 ..................................... ACCCGAATAACTGCTACGGAGGTATGTTAGTCCCC 638963 37 100.0 39 ..................................... GCGAGCGCAGGTAGCTCTGCGCAGCGCGCAGAGTACCGG 638887 37 100.0 38 ..................................... CGGCGTTTAACCGGGCGTATAATCCTTCGGATAGTAAA 638812 37 100.0 36 ..................................... GGCGATGCGCGTCCCGCCGTCGGCGATGAGCAGGCG 638739 37 100.0 38 ..................................... CGGAAGAAGCCCCTGTCACGCGGGGTATCGAGACGCTC 638664 37 100.0 36 ..................................... CGAAATCGCAAACCACGCGGATGGCGGTGCGCTGAG 638591 37 100.0 36 ..................................... CCTCGAAGGCGAGATCAATCGCGCGCTCATCAAAGC 638518 37 100.0 39 ..................................... CAGGTGATGCGGCGCGCCTGGAGTGTTCCCGTGATGATC 638442 37 100.0 36 ..................................... GATTGTCACGATGACTGACGAAGAGACTGGGGAAGA 638369 37 100.0 35 ..................................... CGAAATGTCGTGGGCATTGACCGCGTACTACGTGC 638297 37 100.0 39 ..................................... CGTTATATTCGTTAGAGACTACAACGTTCATTAATTGTG 638221 37 100.0 35 ..................................... TGTCAAAGGCGATTGCGCCAATGTACCCGTGTACC 638149 37 100.0 38 ..................................... TCTGAATCCAAGCGCCCCCTAGCAGCGCTGCACAGCGC 638074 37 100.0 34 ..................................... TGGCCGAGTCCACCGCTCACTGAAAGGAGTTCGC 638003 37 100.0 35 ..................................... CGGGAAGTCGATATCCATGAGTCTTCCTCCTCGGT 637931 37 100.0 39 ..................................... CGATGAGTCCGGGAGAGTGGACGCGAGTTTCAGGTGCGA 637855 37 100.0 38 ..................................... TGGACGGTCGCTGCACGATCGGGTTTTTCGCGGACAAT 637780 37 100.0 38 ..................................... TCGCAGGCTCGTCGCCAAGAATCTCCGAAAAGAGGTGC 637705 37 100.0 38 ..................................... TCGCAGGCTCGTCGCCAAGAATCTCCGAAAAGAGGTGC 637630 37 100.0 35 ..................................... CGGGAAGTCGATATCCATGAGTCTTCCTCCTCGGT 637558 37 100.0 39 ..................................... TGCACGGGGAGAGTCTCCCGGCGGGAGCGCCACAGGCAC 637482 37 100.0 37 ..................................... CATATGAGATGAATGCTTCTCAGGAAACACTATTCAA 637408 37 100.0 33 ..................................... GGACCTCGGCCGCGCCGTACATGCGCCACGCGA 637338 37 100.0 39 ..................................... CCCCAAATTGCTTGGGACTAGCGACGACTTGTGGATGCC 637262 37 100.0 39 ..................................... GTCTAACAGGACGATGCTCATAATAGCGGGTTCGCTGCC 637186 37 100.0 38 ..................................... GACGCAATCGACTCGCTACGCTTGTCAAAAATGCGGGC 637111 37 100.0 37 ..................................... CACCTACACACAACACGAACGGAGAAGACGAAATGAA 637037 37 100.0 36 ..................................... TCTTCAAGGGGCTGGCGCAAGGAGTCGAGAACGCTC 636964 37 100.0 33 ..................................... CGTCGCCACCGCACCACTCGAATCATTCAAATC 636894 37 100.0 41 ..................................... AGGCGGAGCCTCACCGACTGGGCGTGAGTGTTGGGAAGTTC 636816 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 41 37 99.8 37 GTCTTAATGCACCTTATGGCGCTGGGTGCTTTATGAC # Left flank : AGATCCAGCTCATGCGCTCCGACCTGTTGCGCAGGGATGAAATCTGGCTGACGGACAAAGTTGACGGCGAATCCCAGTTGACGCGTCTGTCCGACTTCTCCCGAGACGGTGTTCGCAAGGATGCTGATCTGCTCGGTTTCTACATGTCCGGACGAATCGGTGGAATTCCGCGCATCTGAGGTGATGCGATCATGGCACGGGCACAGAAGTCAAGACCGCAGGATCGTTATCGAGGAGTACGTTGCGAGGGGACTCGTCAACCGCGCACCGAACTCTTTTTCTCCGTTGAAGGAAAGACTGAAGAACAGTACAATCGCTCACTCTTGGATACCCGATATAAGGAGCGATTCGTTCCGACATTTCTTCCAAGAGTGGGGTCGCGGCGATATACGAAGACCTCTCTTATCAACCTTATTGACGCCGCCCGCAATGAAGAGAGGACTTGGAGCCGTCGAAACCGTGGACTGATCTGAATCATTTGTGACCTTGATGAGAACTCA # Right flank : CCTCCCTCCTGGGGATGTCCTGCGATCAGGCAAGATACCAGGAAGATCGCCACTGGCTCGGGAAGCACCAAACAAGCCAACAAGCACAACCTCATTTAACCACATTTTTGCTGATCATGGGGCTGTCGCCACCGATAGACGAACAAAGCGTTCGTCCGCCGGATTTTGGAGCAAAGCTCACAGGACGTCGGTGTCAGCGGGACGATCGAGACGATGCACGTGAAAGACGCTCACAGGACGGTCGCAGCGGCAATAATACACAGTAAACATTCAGTGTAGGGAGAGCTGATGGACAGTGGATCAAGACGAGGGGGGCGTCATGCGCTTGCGGCATCTCGGCCGTCCGGGCACTTCTTCGGACAGCCTGTAGATCGCCTGCGTGCCAGTATGTCTGATACCGCTGGAGGTTGTTCAGTGTCTCCAGTGTTCATGCAGTTATCTTCAATCGAAGTCCTCGAACGGGCGTGGCAGTCCGTCCTTACTCGAGATGCACACGACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGCGCTGGGTGCTTTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 715210-715821 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTPB01000004.1 Actinomyces mediterranea strain Marseille-P3257T, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 715210 36 100.0 28 .................................... ATTCGCCGAAGACTTTGACCTGGAAGCA 715274 36 100.0 28 .................................... TATCCAAGGTGAGGTGTACGTCCTCACC 715338 36 100.0 28 .................................... CATCGAATTGTGCGCCTACACGCACTGC 715402 36 100.0 28 .................................... CAGCCTGAGCCTCATGGTTGTCGCTGTT 715466 36 100.0 28 .................................... GACTGGTCAATTTCCAGACCGAGGAAAT 715530 36 100.0 28 .................................... GTTCGATTGACGTCCACGATTGTAGTCC 715594 36 100.0 28 .................................... TATGTCAGTGGCGCTGGGCGCGGCTTCG 715658 36 100.0 28 .................................... CCGCCTGGCGTGGGGGGCCGATTCCGAT 715722 36 100.0 28 .................................... TCATCCCGAATGTCGGTGCCTCGACCAT 715786 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 CAAGTTTATCAGAGGGAAGGGTGACTGATTCCCAGC # Left flank : AAGACGGGCTGCATGTCCCCGCTGTGGTCGAGTCGTTCGCCCAACAATTCGGGCGCTACGTCGAGGGTGACATTCAACGCCTCGACCCGCCTGTGTGGCGCGGCCCCTTCATCATGGAGTCGTAAGACGATGGCGGACGACGCGATGTGGTGCTTGGTGATGTTCGACTTACCGGTTGAAACGAAGACTCAACGTCGCGAAGCGACCAGGTTTCGCCAGTCACTATTGGACTGGGGCTTCTCCATGGTTCAGTTCTCCGTATACGTCAAGTATTGGCCGACGGGCGGTCAAGACGCCGCGACCATCTCCGCCATCAAGCGATGGCTTCCGCCTGGAGGACAGGTACGGGTCCTCGCCCTGACAGACCGACAGTGGGCGACGGGGCTTCGTTTTGACAACGCGAAGCCCCAATCAACGGAGCCGAAGCCCGAACAGTTGATGATTTTCTAACCCCGGACCGCTCAAAACCGTTGAAATCCTGCGGAAAACCCTTCCCTCGC # Right flank : CGCGTTACACAACCCCCACATTTGTGCGCCAAGTTTATCAGAGGGAATTAGCAACAAATCCAAACAGCATATTCAACACTTCCAATATCGTGGTCACGACTACCAGAATAAATGACGATCAATCTTAATCCCCGTTCTTGACCTTCACTCTGATAATGGGGTTGTGCTCACGACGCGCATCGACCCCTTATCACCATTGGCCTGCAGGAAGCGGTGCTGAAACAACGGAAGTTATTCGAGAGGGGAACACCAGATCGCAGTTCGTGTTCTTCTCTCAGTTTGCCGCGCAGGCAGGATGAAGATTGGACTCTGGTTACTTCTTTCCTAGCGCACTGGGACGCGATGAATTCGTCACCGCCCGTTTCTACAGCCAGGCAACCGGCAGTAATCAGCGCTTGGTCGAAGTGTTGCGGCATGTCATCACTCCATCGTCAGCGATTATGCGACTCCCCTCTTCGTCGCGAGAATTCAGCGACATAATCGCCGGAGTCCAACGAGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAGAGGGAAGGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //