Array 1 17898-16234 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNN01000090.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N20134 SEEH0134_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17897 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17836 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17775 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17714 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 17647 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 17586 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 17525 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 17464 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 17403 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 17342 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17281 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17220 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17159 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17098 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17037 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 16976 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 16915 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 16854 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 16793 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 16690 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 16629 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 16568 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 16507 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 16446 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 16385 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 16324 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 16263 29 96.6 0 A............................ | A [16236] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35279-34154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNN01000090.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N20134 SEEH0134_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35278 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 35217 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 35156 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 35095 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 35034 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 34973 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 34912 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 34851 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 34790 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 34730 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 34669 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 34608 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 34547 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 34486 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 34425 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 34364 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 34303 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 34242 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 34181 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //