Array 1 1056-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRF01000175.1 Rothia kristinae strain SA11 contig_175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1055 28 100.0 33 ............................ GACGTACCGCAACGGCGCTGGCGGCGTTGCGGA 994 28 100.0 33 ............................ GATGGGCCGCAGGGCGTCGGTGGGGTCGAACTT 933 28 100.0 33 ............................ CGGACGAACGGCGGGCTTCCGGCAAGCGTTCCG 872 28 100.0 33 ............................ GAAGACCACCGTGTACATGCCCCTCACGCTGCA 811 28 100.0 33 ............................ CATGAGGGCGTCCTGTACAAAAGTCATGAAAAC 750 28 100.0 33 ............................ CACGCGCCGCGACCTGCGGGCCGTGTTCGGCTA 689 28 100.0 33 ............................ GCAGGCGCTGGCGCGTGTCGGGTTGCCGACCTC 628 28 100.0 33 ............................ CACCACGTGAGCGACGGCCAGAGAACCCCCTCG 567 28 100.0 33 ............................ CTGTTCCATGGACTCCCCCAGCTCGATGCGCAG 506 28 100.0 33 ............................ CCCGGCGGCGGGGGTGTCGTCGGGGAGGGTGAA 445 28 100.0 34 ............................ GCTGCCCCAGCGCAAGCTGTTCCGCCGCCGCTTC 383 28 100.0 33 ............................ GACCGTCCGCTCCGCAACTTGACGGACCCTGCC 322 28 100.0 33 ............................ GCGCAGATGCGGCTGCACTTCCCAGGACCACTC 261 28 100.0 33 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGC 200 28 100.0 33 ............................ GCAACGAGCGTCGGCGGGAAGGTCGGGGAGGAA 139 28 100.0 33 ............................ CGCGGCTGGGGATGTGCGGCTGGGGAAGAACCT 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCCCCCCACGGCACCACCCGCGTGACCCTCG # Right flank : CCGAGCGGCGGCTGAAAACGTCGAGAATGTTCACGCCCTCCCCGCGCATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4613-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRF01000059.1 Rothia kristinae strain SA11 contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4612 28 100.0 33 ............................ CACGTGCTCGGCTTTCAGGAGCCCGTTATCGTG 4551 28 100.0 33 ............................ GGTGTGGGAGTCCATCAGCACCGGCGGCGGCTC 4490 28 100.0 33 ............................ GGATCCCGCGTTCATGATCATCGTCAGCTGCCC 4429 28 100.0 33 ............................ GGGGAATGATGGGTGCATAGATCGGCGCCTCGT 4368 28 100.0 33 ............................ CGAGTCTCCGGCCTGCAATGCCAGTGACGTTGC 4307 28 100.0 33 ............................ GGGCAGCACCTCCGGGAACAGCTCGGCAGCCGC 4246 28 100.0 33 ............................ CCGGGCGCTCTCGTCCTTGTACGCAGTGAGGGT 4185 28 100.0 33 ............................ CCAAGATGCGCGGCGTCGTGGGCTATCTGCTCG 4124 28 100.0 33 ............................ GCGAAAAAGTGGATGGGGTGCTCGGAATCGATG 4063 28 100.0 33 ............................ CCATCAATGAACCATCAAGGGGAACCCCTACTG 4002 28 100.0 34 ............................ GAACCCCCGTGCGCCAAGCGCCGGGGGTTCGGTG 3940 28 100.0 33 ............................ GCATGACCGAGAAGAAGAGCGCAGCCGATGAGG 3879 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 3817 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 3756 28 100.0 33 ............................ GCTCATGGGATCCATTGTGCGCCTTTCTAGAGG 3695 28 100.0 33 ............................ GACCGCTCGGTCGCTCTCGGGCTCAAACTTCGA 3634 28 100.0 33 ............................ GTTTGGACGCGCTGCTGGAGCAGTGAGATGTCA 3573 28 100.0 33 ............................ CCGAGGACACCATGACCGCAATGCTCAACACTC 3512 28 100.0 33 ............................ GCGCCTCGGGGCAGCCCCTGGGAGAGCAGGTGT 3451 28 100.0 33 ............................ CACTAGCCCCTTTGCCTCCAGCTCTGCCTTGGT 3390 28 100.0 33 ............................ GGGCATCCTCCATAGGGCCTTGGTGGGTGAGCC 3329 28 100.0 33 ............................ CGAGACCGTTCGCGAGTACAAGGCCCAGGAGGA 3268 28 100.0 33 ............................ CCCGACGTGCGTGCCGTGGTTGCGGCACTTCGA 3207 28 100.0 33 ............................ CACCGGCCCCTCCTTCTCTGTGGCCCGCATGAA 3146 28 100.0 33 ............................ CGTCGGCGGAATCACCTGCACCAGGCCCTGGGC 3085 28 100.0 33 ............................ CTGGCGGAGGTGCCGGTAGTCGGCTCCGAACTG 3024 28 100.0 33 ............................ GGAAGCCGATGTGCCGTGGTGGCTCCGCGGGCA 2963 28 100.0 33 ............................ CCCGCGGAATCGTCGCGCTGTCCATCAGAACGG 2902 28 100.0 33 ............................ GTAGCCCCAAAGTAGCCCCGGCCGGGTTGGGGA 2841 28 100.0 33 ............................ GGGCACCAGCTTCGGCCTCAACGAAGCCGCCAC 2780 28 100.0 33 ............................ GGTCTCCACGAAACAGGAAAACGCTACCAAGGA 2719 28 100.0 33 ............................ CCCATTTGAGGAATGCGTGGATCATGTCGAATG 2658 28 100.0 33 ............................ CGGGGTTCTTGTCGGTCTCTGCTGAGGCGGACG 2597 28 100.0 33 ............................ CTCGGCGGCCTGCAGCAAGTCAATCAGGCTGAG 2536 28 100.0 33 ............................ GGAGAGTCGCATGACCCCGATGACCGACGCGGA 2475 28 100.0 33 ............................ GAGGGCCCGCACTATTAGTGCGGGCCCTCTCGA 2414 28 100.0 33 ............................ CCCACCCGTTGTTCTTCAGGGTCTCGATCAGCT 2353 28 100.0 33 ............................ CCGTGCAAGCTTTTGGGGGTGGGAGCAAATGGG 2292 28 100.0 33 ............................ GTGATGGCCGAGACCACCGGACACGCCTACACC 2231 28 100.0 33 ............................ CTCAGCTGCCACCGGCGGAAGAAATCCGCCAGC 2170 28 100.0 33 ............................ CCCCGCCCGCCGAGGACTTCACCCTCGCCGACA 2109 28 100.0 33 ............................ GGTCCGCAGATCCGCGAGCGCATCCGTCCACGC 2048 28 100.0 33 ............................ CCGACAGGCCGGCAAGAACGACATCCCCGTCGC 1987 28 100.0 33 ............................ GAGTTGGGGCGCGGCGCACGGAGGGCGGTAATG 1926 28 100.0 33 ............................ GAAGGCCCCGCCCCTCACGATGGAGGGGCGGGG 1865 28 100.0 33 ............................ GCACATCGTGCAGGCGATCAACGCCCACCAGGG 1804 28 100.0 33 ............................ GCGTGTGAAGGCCGCTTACCTGGCGCTGCGCGG 1743 28 100.0 33 ............................ CTTCTCGGTGAGGCTGCCGAGCAGCCCCTCGAG 1682 28 100.0 33 ............................ GCGCTGGCTCGACAAGCGCGGCCACGAGTACAC 1621 28 100.0 33 ............................ GGTGCCGGTGAGCCCGCGGATGTCCAGGGCCTG 1560 28 100.0 33 ............................ GACGGGCAGATCGTGTTCGCGGACACTGACGGC 1499 28 100.0 33 ............................ GTGAGCGAGCACCTGGAGAAGACCGAACAGGAC 1438 28 100.0 33 ............................ CCCAGAGGCGTTGCGTTCGAACCGCCCCATGAA 1377 28 100.0 33 ............................ CAGGAGACGCGCCGGGGCCGCCGGGCGACGCTC 1316 28 100.0 33 ............................ GTTGTACGTCCCGACCTTGGGGGTCTTGTTCAC 1255 28 100.0 33 ............................ CTTGGCCTTGAACTTCTCGGTGAGGCTGCCGAG 1194 28 100.0 33 ............................ GCTGATCACCCTCGAGACCACCATCGCCGAGCA 1133 28 100.0 33 ............................ GAAGGATGTCCCCTCGAATCAGCTCAGCATGGT 1072 28 100.0 33 ............................ GTACATGCGCCCGGTCTGAGAGGCCCGCGCTTG 1011 28 100.0 34 ............................ CTACGGGTGCGGGATGCTCACGCTCCACGAGGAC 949 28 100.0 33 ............................ GGTGTTGTAGCGGCTTGCAAGCAAGCTGGCAAG 888 28 100.0 33 ............................ CCCCGACCCCTACGGCACCACGGACGGCACTGA 827 28 100.0 33 ............................ GCGGGGGCGGTCGGGTCATCCGGGTCCCCCGGA 766 28 100.0 33 ............................ CTGGCAGAAGCTCTACGCCGATGCCCACGCAGG 705 28 100.0 33 ............................ GTTCTGAAGGGGAGCGATGGAGAAGGTGTGGGA 644 28 100.0 33 ............................ CAAGCTCCTCGCGGGAGGGGATTCCGCGAAGGA 583 28 100.0 33 ............................ GCCATCCGCGGACGCGTCCACCAGGGTCCGGTC 522 28 100.0 33 ............................ GACGAGCGCAACACCCCCTAAAACCTCCACAGA 461 28 100.0 33 ............................ GCGTCCCACCCGTCGTACCCGAGGGGTACCCAG 400 28 100.0 33 ............................ GAACACACCGAATTGTTCGAGGGGATCGAATTC 339 28 100.0 33 ............................ GGGTCCCGGCTTGCGAGGACCGCGCCTCTTCGA 278 28 100.0 33 ............................ GAAGCACGCAAAAGATGGAACGCTGTGGAGCGG 217 28 100.0 33 ............................ GAGCTGTGCCGCTGCGTCTGCCGCCTGAGGCCG 156 28 100.0 33 ............................ GGTGTAGTGCCCGGTGACGGCCGGCTCCGGGTC 95 28 100.0 33 ............................ CCTCCAGCTCCCCGAAACCCCCATCCCACAACA 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 76 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CCGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //