Array 1 44207-42720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWMW01000010.1 Neisseria meningitidis strain Nm310501 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44206 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 44140 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 44074 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 44008 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43942 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43876 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 43810 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43744 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43678 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 43612 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43546 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43480 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43414 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43348 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43282 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43216 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43150 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 43085 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 43019 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 42953 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 42887 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 42821 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 42755 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //