Array 1 183871-185911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUX010000004.1 Erwinia amylovora strain Ea92-1-1 Ea_92-1-1_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183871 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183932 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183993 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 184054 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184115 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184176 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 184237 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184298 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184359 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184420 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184481 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184542 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184603 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184664 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184725 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184786 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184847 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184908 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 184969 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 185030 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 185091 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 185152 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 185213 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185274 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185335 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185396 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 185457 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185518 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185579 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185640 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185701 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185762 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185823 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185884 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196819-198802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUX010000004.1 Erwinia amylovora strain Ea92-1-1 Ea_92-1-1_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196819 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 196880 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196941 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 197002 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 197063 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 197124 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 197185 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 197247 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 197308 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 197369 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 197430 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 197491 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197552 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197613 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197674 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 197735 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 197796 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 197858 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 197919 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 197980 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 198041 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 198102 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 198163 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 198225 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 198286 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 198347 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 198408 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 198469 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 198530 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198591 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198652 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198713 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198774 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 208266-208594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUX010000004.1 Erwinia amylovora strain Ea92-1-1 Ea_92-1-1_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208266 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 208326 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 208386 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 208446 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 208506 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208567 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //