Array 1 5203-5530 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGS01000030.1 Acinetobacter baumannii strain MRSN15093 MRSN15093_contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5203 28 71.4 32 AACACGCC.................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT 5263 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 5323 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 5383 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 5443 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 5503 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 6 28 93.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAAT # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12272-7017 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHGS01000002.1 Acinetobacter baumannii strain MRSN15093 MRSN15093_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12271 30 96.7 30 ............................A. ACATCTTTATCAGTATGACGAACCTTAGAC 12211 30 100.0 31 .............................. TGGCTGCAAGCGGGACCATAATCCATGCAGC 12150 30 100.0 30 .............................. TCTGGGAGATTTTGAGAGAGGGCACACTGC 12090 30 100.0 30 .............................. CAGGACATTGATCAGGTACTGATTTGATAA 12030 30 96.7 30 ............................A. TATCGCTTTCATTTTAAAGACGAATATCAA 11970 30 100.0 30 .............................. CATGAACTAATTTAAAAGCAACATTAGTAA 11910 30 96.7 30 ............................G. GCCTGTAGCAAAAGCAAAAGATTTAGCATT 11850 30 96.7 31 ............................G. AGCAGTAACCAAAAAAAACCGTTCAGGGGAA 11789 30 100.0 30 .............................. CTTAGCTGATCTGCGGATAGTTGCCACAGT 11729 30 93.3 30 ............................AG TTATAGGCATAGAGTGCATGGGGCATGTTG 11669 30 96.7 30 ............................A. AAGGAAAGGGTAGGCGTTCAGACCGTAAAG 11609 30 96.7 30 ............................G. ATGAAACTAAAAGCTATGCTCAATTAAAGA 11549 30 93.3 30 ............................AA GATCAGGGGCAACGAAAACAAGGATACCCG 11489 30 100.0 30 .............................. TACCCGATGCAGGCTGACCGCCAGTAATGA 11429 30 100.0 30 .............................. TCTTAGCAAATAAACTTGCGTAAGTTCCGT 11369 30 93.3 30 ............................AG TAAAGAACAACTTTCTTTAGAGTTGCCTAT 11309 30 100.0 30 .............................. AACTGAACTTTGCTATCAAAAAGTTTTAGT 11249 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 11189 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 11129 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 11069 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 11009 30 93.3 30 ............................AC TAAGCGTTCCATCTCGTACCGCAACTTAGC 10949 30 93.3 30 ............................AG ACGAAGGACATTTAGTCGGAGGATCAGGAA 10889 30 96.7 31 .............................G AAAGAAGGTCCTGACAAGTTAGAAAATGAGA 10828 30 100.0 30 .............................. GTAGTTCATCTGCCTAGCTCCACCATGTTC 10768 30 93.3 30 ............................CA ACATACCACTACATAAGCCCTTGTATATAT 10708 30 100.0 30 .............................. TGATTTACACAGCGGGCTGATGCGGTTTTC 10648 30 93.3 30 ............................AG TTATTAATATCTTTGCGTGCAAGATTACGC 10588 30 93.3 30 ............................GA AACGACATTCAGTTCTATCCCTTTTAATTC 10528 30 93.3 30 ............................AA ATGGTGGTTCATTGTGTCAGTTCTCTATAG 10468 30 100.0 30 .............................. TTATCGATGCGGAGACAAAACCATGCGCGG 10408 30 96.7 30 .............................G GAATGAACTTGATGTACAAGATCGTGAATT 10348 30 100.0 30 .............................. TTGCGTCATATCACGTTGAAGTTGATGAAA 10288 30 96.7 30 .............................G TCATGGCAATCGCGATACTTAAGTTGTTTT 10228 30 93.3 30 ............................AA TAACTCAGGCTTTAAGTCATTAGCCATATT 10168 30 96.7 30 ............................A. CTTCCATAAGTTTACGGCAATCAGATTGGC 10108 30 100.0 30 .............................. GTTATTCATATTTTTGTAGCTGGTGCAATA 10048 30 96.7 30 ............................A. CAAAGTGCAGAGATGAAGAAGTATTTTTAC 9988 30 93.3 30 ............................GA GCCAAAAATGTTATGACCCTGCATAATCTT 9928 30 96.7 30 .............................G CTCCAGACGATTGGCGTGATACTCCGGATG 9868 30 93.3 30 ............................AA TCGTCTGGAGCAGGTTCAACTTCAGGTATT 9808 30 100.0 30 .............................. AGCAAAGCGTGATTCAGGTTCTTGATACCA 9748 30 100.0 30 .............................. TGGATTGTTTAAAAAACCTAAATGAGTTAT 9688 30 93.3 31 ............................CG CGAAAACAAGAACAGTTACTAAGATTGCTAT 9627 30 100.0 30 .............................. GATCAATCAACTTCTTACAGTCTGATTGGC 9567 30 93.3 30 ............................AG ACGTATATATGGACGTTCTGCAAAGTCTTT 9507 30 96.7 30 .............................A ACGGAATCAAAATTGCAGCAGCAGCTACAG 9447 30 93.3 30 ............................AG AAACGGGCAGAAGTTTCAGGACCTGTGGAA 9387 30 100.0 30 .............................. AAAAATGTAAATAAACTGATGGCTGGCTTA 9327 30 96.7 30 ............................C. TGTCGCTTCACGCGCACCTGTGCCCTGTAT 9267 30 96.7 30 .............................G CTTCAGCAGCGCAGACTCTCAGGAACTGAT 9207 30 93.3 30 ............................CA TTGGTGGCAATTGATCTTTTAAGCTGATCA 9147 30 96.7 30 ............................A. TCTAACAAGTGAATATAAAGAACTCACAAA 9087 30 96.7 30 .............................G AGCTGTGCATTTACGTTCAAACTGATAATT 9027 30 100.0 30 .............................. TAAGAACAATTCCAACAAGAGACAGATTTG 8967 30 93.3 30 ............................AC AAAATCCAATCGATCACGACGGCTTTTCAA 8907 30 96.7 30 ............................A. GAAGGTCGTACTTATCCTTATGTTGAACTT 8847 30 100.0 31 .............................. ACAAAATTTAAGCAACTTTTGCTTATCTTCA 8786 30 100.0 30 .............................. GTTGTCATGCAAGTTCTGCAAAAATGCCTT 8726 30 96.7 30 .............................A CGTTTTATAGACATTTATCTGAACTTTGCG 8666 30 93.3 30 ............................AA TGTATGTTTATTTTGATGCAGGCGGTAAAA 8606 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 8546 30 96.7 30 ............................C. ACAAGTTACCCTTAGAAGATGAGGGTAAAA 8486 30 96.7 30 .............................G AAGAATTTGCAGGCCGTAGATTAACTAAAA 8426 30 93.3 30 ............................AA GAAATATTTGGAAGTTGCAAAATATTAAAA 8366 30 100.0 30 .............................. TCTTTTGTAAGTCAGTTTTAACTTTATCTA 8306 30 100.0 30 .............................. CAAACCTTTTATTGATGAAATGCAACAAAA 8246 30 96.7 30 .............................G ATCCGCCTCTTGAATGTCCAGATATTGGCT 8186 30 93.3 30 ............................AC CACCTGCATGACGATCTACATCGGCATACA 8126 30 100.0 30 .............................. CTTGAGCCATTGTGCGGCTACCTTGTCGCA 8066 30 96.7 30 .............................A CCCAAAGAAAAACGGGTAATCAAACGGGTA 8006 30 96.7 30 .............................C CGCTTGTCTGTCTCTAACTTCCTGCGCTAT 7946 30 93.3 30 ............................AG ACTGAAATTGTTGTGAAGCGTTACCAACGT 7886 30 96.7 30 .............................A AACGTTCAAAAGCTAAAACAACAGCTGAAG 7826 30 96.7 30 .............................A CAAACACAGCTTTAGCAGCAACAGAGTTAC 7766 30 96.7 30 ............................G. TGGCAGTAAATCGCATGACATTGCGTTATG 7706 30 93.3 30 ............................AG CAAATGGCAACCAACTACCTGCTTCATCAT 7646 30 93.3 30 ............................AG ATGTTGAATTGTATAACATGGATGCGTTTA 7586 30 93.3 30 ............................AC TTTGGAATTCGTTTATGCAATTCGCGCATT 7526 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 7466 30 100.0 30 .............................. CGGCACCACCCAGAGTAACTTTACCTTTAG 7406 30 93.3 30 ............................AC AGGAAGTTAAGGACATTGAACAGGCAATGG 7346 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 7286 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 7226 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 7166 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 7106 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 7046 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 88 30 95.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTCTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //