Array 1 77694-77299 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWC01000003.1 Amycolatopsis rubida strain DSM 44637, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77693 29 86.2 32 .CCT...............G......... TGGAGGATCGACCAGCCGCCCGCGTCGTCTTT 77632 28 86.2 32 ...-...............G.C......T TCGAGAGCGACCCCAGCACTGCCTACGTCGAC 77572 28 86.2 32 ..........T.....T..-........G GTCACCCCGACTCAGGCGGCGGAGAACCTGGT 77512 29 82.8 32 CC...T.............G........A CGCGGTTACGACGTCCGCTGATCTGCGGTTTT T [77503] 77450 29 86.2 32 ....A.G............G........G TTGTAGTGGATGAACCACGGCCACGACGCGGC G [77433] 77388 29 100.0 32 ............................. CAGGTCAATTACGGCATCGCGGTCCGCGACAC 77327 29 86.2 0 ...................G...T.GT.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 87.7 32 GTTCTCCCCGCGCGAGCGGAGGTGGTCCC # Left flank : GCACCCCCAAAGGCGACCTGTTCCGCCACACCTACGACGCCGCCACCGGCGAATGGACCCAATGGGCCAAACCCTCCGGCACCGGCTGGAACGGCTTCAAAACCATCACCTCCCCCGGAGCCGACGTCCTCTACGGCTCCTACCCCGCCGAAGGCGGCGGCCTCCTCTGGTACCGCTACCTCCCCGCCAGCGACACCTGGTCCGACACCGGACGCGCCAACGGCAAACTCATCGGCACCGGCTGGCACGGCCTCTACGGCATGACCGCCACCCCCGACTCCTGCCGCCTCACGACCTGACCACACCGCAGCGGGCCGGGTGCCGCCACAGCCACAACGCGGCACCCGGCCCGCTGCGAACAGCCCAGCAAAGCCAGTACCCCGCATACCCAAGCCAAGCTCACGGCCGACACGGAACCAGCCCCGAAGCAGACCATCTCGTCGGAGCCGACGAAACCGCCCAGACAGACACTCGACTGGTATAGACCTGGTCGCTGGAAT # Right flank : TCTGAACCATCCGGGTCTGAGCCGGATGGTTCATCTTCGCGACGGTGCAGGAGCAGTCCAGGCTCGACCGCAGGGCCATCATCGGCAGCGGTCTCTTCTCCTCGCATGCGGAGACTGGCTCCGTCGTCTCTTATAGCGCACGGCGACGCTGAAATGCTTCCCGCGCCCGCAGCGCGCCAACACCGGGGATGACGTGCCGGTCCAGGATGGGCACGTGGGCCGAGATCGTGTCCGGTGGCTTTGTGCATTCCTCCACATCCTGTCGTGGCTGGCCCAGCCAGACCGGGCCGGGACCACGTCCTCGAGTCGCGTTCCGCGCGTAATCTCGCCAGTCGACGAGCCCTTCCATACGCGGATAGCGTCGCGAAGCCGTTGAAACGATGTCGATCCCGCAAGGGAGCATCAAACGCGGCACGACAGGACTGCGGGCATTGAGACGATCAGGTGATTCTCATCCTCACAGTTTTCGGCCAGCTCCTGTTCCGGCAAAGTCGAGCCGT # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGAGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 484905-483758 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWC01000001.1 Amycolatopsis rubida strain DSM 44637, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 484904 37 100.0 36 ..................................... TTCTTGCCGGTGACCGGGCTTTCGCCGATGCAGATA 484831 37 100.0 38 ..................................... AGTCCCGGTTCGGTCCCGGGGCGGGCAGGCGCGGACGC 484756 37 100.0 37 ..................................... CGGTGGATCCCGGCGGGGGCGGGGGGTTGCCGGAGCC 484682 37 100.0 39 ..................................... AGTCGAGTGTCGGTGGTGGTTGCCGATTCCGGTCAGCGC 484606 37 100.0 38 ..................................... CACCGCCCGGAGGCCGCAATGATCAGCACGTTGTGGGA 484531 37 100.0 35 ..................................... CCGCAGCCGGACCAGCCGTTCGTCCTCGGCACCGG 484459 37 97.3 37 .................A................... ACCTCCAACGCGTGGACGCTCGTGCCGGACGAAGACA 484385 37 100.0 38 ..................................... CCACGCACGACTGCGGCACGTCCCCGAGCAGTACTGCG 484310 37 100.0 36 ..................................... TTGTCTTCCGCGGGGCGCAATCTCGGCCACGGCGGA 484237 37 100.0 37 ..................................... CGCACCTCCGGGTCGTCCAGGAAGCTCCGCAGCCGTA 484163 37 100.0 36 ..................................... TCACACGCCTGGAGCAGGTCACCGGCCGCGAAGCCA 484090 37 97.3 37 .................A................... CTGTCCAGCGCGCGAGCCTTGGACCTGGCCCGCGACG 484016 37 100.0 39 ..................................... GACGACGTGCCGGTCGAGCTGGATCCGGTCGGTGAGGTG 483940 37 97.3 39 ....................................A ATCCAAAGTGGACAGTCGGGCACGCTGTATCTGCTGGGG 483864 35 86.5 36 ............G--.....T..G............. CGCGACGTGCAGAAGGCCACCGCCGAGCACTCCGAG 483793 36 78.4 0 A.............T...........CT.-...CGG. | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 97.3 37 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGAAAC # Left flank : TGCTCCCGAACGTGCAGGCCCGGCTGCTCGCGCGGCACCTGCGAGGAGACCAGCCCGCCTACCAGCCCTGGATCGCGACCTGACATGGAACTACTGATCACCTACGACGTCGACACCACCACCCCCACCGGACGCCGACGGCTGCGACACGTCGCGCGGGCATGCGAAGCCTACGGATCCCGGGTACAGAAATCGGTGTTCGAGGTCGTCGCGAGCGAGGCGCAGGTACTGCTCCTGCGTCACCGTCTGCTCGACATCATCGACCCCGATCTCGACAGCATCCGCGCCTACCGGTTACCCGCCGGGTCTTTCGGCGACGCTGCTCACCTCGGACACTCCCCACCGGCAGGCCACAACGCCCCGCTCGTGTTCTGACCGCCACCTCGGAGCCGGAAGCGTCGTGCGACACGCCACCAGGTTCCAAACCGGATCCCGGGCATGTCGGTAACGAACAGAGCACAAGACGCCGCTGTCGACCAAGAATTCCCAGCTCACGCAGG # Right flank : AGTTCCGGATCTCCAGCAAACGCTGTATGCCTTCGCTACGGCACACCATCCCTCAAATCATGCGAGTTAGCGGGCTAGCCGGCTCGCGTGACGTCGAGGAGTGCCGGGTCGGTGGCTTCTAGGGCGTCCATGAGCGAGTCCAGGCCGGATGTTTGCGCTTGGCTGACTTCGGTGCCGGTGAGGGGGATCAGGGTGACGAGCTGGACGGTGACGGTGCCGTCGCGGGTGATGGCGTCGAAGGCTTCGTCGAGGTAGGGATGGCCGGTGGCGAGCAGCCCGTGGATCTGGGTGCGGTCGAGGATCGGCGTCGTGTTGGGGATCAGCTGCGGCACGACAGGCCCGCGGTCGGTGGCGAGGATCTGCTCGAACAGCACTGTGACGAGCTGCGCGGCGGCTCCGTCTTGGCCGGGCAGGACCGAGCAGACGAGTTCCTGCGGTTTGAGCGCGGCGACGTCGAGATCGGAGAGTCCCCGGGTGGCGAACGTGACGAATTCTGGCCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //