Array 1 163500-160664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPN01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163499 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163438 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163377 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163316 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163255 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163194 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163133 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163072 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163011 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162950 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162889 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162828 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162767 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162706 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162645 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162584 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162523 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162462 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162401 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162340 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162279 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162218 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162157 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162096 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162035 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161974 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161913 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161852 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161791 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161730 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161669 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161608 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161547 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161486 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161425 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161364 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161303 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161242 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161181 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161120 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161059 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160998 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160937 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160876 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160815 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160754 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160693 29 93.1 0 A...........T................ | A [160666] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181989-180007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPN01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181988 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181927 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181866 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181805 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181744 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181683 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181622 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181561 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181500 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181439 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181378 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181317 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181256 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181195 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181134 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181073 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181012 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180951 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180890 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180829 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180767 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180706 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180645 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180584 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180523 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180461 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180400 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180339 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180278 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180217 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180156 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180095 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180034 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //