Array 1 50486-52330 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDV01000001.1 Listeria monocytogenes strain LM193 NODE_1_length_1231345_cov_53.9163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 50486 29 100.0 36 ............................. CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC 50551 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 50617 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 50681 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 50747 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 50812 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 50877 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 50941 29 100.0 35 ............................. TTGATAACATCTTTTACTGAAAGACCTGCCTTTAA 51005 29 100.0 34 ............................. TTGGATGCAAAAACTTTAATAGCCTCTGCATCAA 51068 29 100.0 35 ............................. TTATCTAACCAACCCCGCAAAACAGTATCAACAGT 51132 29 100.0 37 ............................. TTGGTTTATCAAGATGAATGCAACACACTTGCGCCAT 51198 29 100.0 36 ............................. AAGAAACGCAGGAAGAAGCTCCACGCCGCAAGCGTC 51263 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 51328 29 100.0 35 ............................. ATTTTATTACGGCTGGTGAGTTGTCCGCCGCACTA 51392 29 100.0 34 ............................. GTCGATACAATCAACAAAGAAGCGCTAGATATGA 51455 29 100.0 35 ............................. ATGAGTGCATCATAACGTTTTGCTACATAAGAAAT 51519 29 100.0 36 ............................. AAAAGTTCAAGAATTTGAACCATCCATTTAGCCCAC 51584 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 51650 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 51714 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 51780 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 51845 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 51910 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 51974 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 52040 29 100.0 38 ............................. GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC 52107 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 52170 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 52236 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 52301 29 93.1 0 .......................A....C | C [52324] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //