Array 1 502-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBU01000130.1 Enterobacter roggenkampii strain 1-RC-17-04134-1 RC_17_04184_1_S15_R1_001_contig00130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 501 28 100.0 32 ............................ ATGCTGCGGCCCTCGTTCGTGTCCTCATACTG 441 28 100.0 35 ............................ TGAAAATCAAACTTGTAATAGATTATCTCCTGCAT 378 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 318 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 258 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 198 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 138 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 8 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATGATTCGTGCAGCCTAGTCTATTCCGTATAGGGTTCACTGCCGTACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 134644-134853 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBU01000009.1 Enterobacter roggenkampii strain 1-RC-17-04134-1 RC_17_04184_1_S15_R1_001_contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134644 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 134704 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 134765 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 134826 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GTCACACGGTGTCAGTGATGCGTCGACAACGAGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-812 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBU01000018.1 Enterobacter roggenkampii strain 1-RC-17-04134-1 RC_17_04184_1_S15_R1_001_contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 32 .........A.................. TGAAAATCAAACTTGGAATAGAGGATTTAACG 63 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 124 28 100.0 32 ............................ ATGCTGCGGCCCTCGTTCGTGTCCTCATACTG 184 28 100.0 32 ............................ TGAAAATCAAACTTGTAATAGAGGATTGCCCG 244 28 100.0 32 ............................ TTCTGCATCGAGCCAGCGTACTGCGCCGAATC 304 28 100.0 32 ............................ ATTGCGCGTAAGCCCTCAGCCGGGCGACCCGG 364 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 424 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 485 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 545 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 605 28 100.0 32 ............................ GTTCAATTTCCATAACACGGTGCCCTTGGCGA 665 28 100.0 32 ............................ AAACGTGGCTTCATCATCAGAGACTTTGAACG 725 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 785 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGG # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15679-16909 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBU01000018.1 Enterobacter roggenkampii strain 1-RC-17-04134-1 RC_17_04184_1_S15_R1_001_contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15679 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 15739 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 15800 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 15860 28 100.0 32 ............................ GCCTGAGGTCAGCAGCCCGGTCATCGGGTTCT 15920 28 100.0 32 ............................ CTCCAAATCGCGCGTCGAATAGCCCGCTAACT 15980 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 16041 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 16101 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 16161 28 100.0 32 ............................ TGTCTGATTAGCCAGGACACGTACAGCGCCAA 16221 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 16282 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 16342 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 16402 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 16462 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 16522 28 100.0 32 ............................ GGAACTGTCGGTTAATTCGGTTGAATGTGAAC 16582 28 100.0 32 ............................ TGACCAGCAAGCATTTCAGGGGTAACTGGCGG 16642 28 100.0 32 ............................ CCTTATACATGCTGTGTGGACCCTCCATGACC 16702 28 100.0 32 ............................ TGAATCGCCAGCTGAGCGTACTGGAAACCACC 16762 28 100.0 32 ............................ AAATGCAGGGCCATCAGCGCGGAAGCGGATAC 16822 28 100.0 32 ............................ ACCACGGCAACACTCTGCACGGAGCCGTCACG 16882 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGCCATGGAAATGGCGTCGCTGCCACACGGAAAGCACAAGTAACAATCTCTCACAAATATTCACTGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATTCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGAAAAAAATAATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATCTCCGATAACATACGCGCATTCAACACTTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 26463-27092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBU01000018.1 Enterobacter roggenkampii strain 1-RC-17-04134-1 RC_17_04184_1_S15_R1_001_contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26463 28 100.0 32 ............................ TTCCCGTCAGCTCCACGAAACGGAGCCCATAA 26523 28 100.0 32 ............................ TGGCCGCCGCGAACATCCTCCCGGATGAAACT 26583 28 100.0 32 ............................ CGAGTGGGCACGAAAACAGGATATGTACGTAT 26643 28 100.0 33 ............................ CATGCTTATAAAGCCTCTTGTCGTCAAAATCCA 26704 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 26764 28 100.0 32 ............................ ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 26824 28 100.0 32 ............................ AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 26884 28 100.0 33 ............................ ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 26945 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 27005 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [27029] 27065 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGATTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //