Array 1 250-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000201.1 Shewanella algae strain A3/19 NODE_211_length_286_cov_31.427673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249 29 100.0 32 ............................. GCCCGCTGTTTTGCCTCGTTCACACGCTCGGA 188 29 100.0 32 ............................. CACAGCACCAGAAATAAAGGTTAAGTATCTGT 127 29 100.0 32 ............................. ATATTTACTGCTCAATGCAACACCGTCTTCAT 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : AACCGCTCATTCAGATTGAGTTACGTTGTCAGTATA # Right flank : GATATGGTCGCCCCAGGAGCTTCGCGGGCAGTTGTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 250-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000200.1 Shewanella algae strain A3/19 NODE_210_length_286_cov_48.371069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249 29 100.0 32 ............................. ATATGGTCGCCCCAGGAGCTTCGCGGGCAGTT 188 29 100.0 32 ............................. CCGGAGAAAACTATTGCAGAACCAGCTAACGC 127 29 100.0 32 ............................. CTCTGCGTCCAGCGTGTTATCAACATCAGCCG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : AACCGATATTTACTGCTCAATGCAACACCGTCTTCA # Right flank : GCGCAAACTTTCGCGAGGCTGACCTAATAAGATGTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000261.1 Shewanella algae strain A3/19 NODE_271_length_225_cov_31.836735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. TAAATGGCCGATATTGCAAGCCTGGTTGTTAG 99 29 100.0 32 ............................. ATCAAAATAGTTGTCGGTATCGAGGCACTTGG 160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : AACCGTAAAAGCCCTGCTTGAATATTGCGCGTGGGAGG # Right flank : CTCTGCGTCCAGCGTGTTATCAACATCAGCCGGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000262.1 Shewanella algae strain A3/19 NODE_272_length_224_cov_39.288660, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37 29 100.0 33 ............................. CGGGTCCCTCCCTAACCAGCATCTGCCACAGGA 99 29 100.0 32 ............................. GAACAGTTGGCAGCCTTGGATCACATGAAGAA 160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCACTCACGGGGATAAACCG # Left flank : ACCGCCGGAGAAAACTATTGCAGAACCAGCTAACGCG # Right flank : CTCATTCAGATTGAGTTACGTTGTCAGTATAGGTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102777-101222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000008.1 Shewanella algae strain A3/19 NODE_8_length_152010_cov_42.811170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102776 29 96.6 33 .............T............... CGGGTCCCTCCCTAACCAGCATCTGCCACAGGA 102714 29 96.6 32 .............T............... CCCAAGCGCAATGGCGGCTTTAAGGTGCTCAA 102653 29 96.6 32 .............T............... CCGCCTACCACCGCATCAACATCTGAAGCACT 102592 29 96.6 32 .............T............... GCCTTAAAGATAAGGTCTGGTATCGCTCTGAG 102531 29 96.6 32 .............T............... TGCCCTAGTTCTGATTGCACAGCCGCAGCGAT 102470 29 96.6 32 .............T............... CTTTGCACCGAACCGCGCACCCGCAACCATGG 102409 29 96.6 32 .............T............... CACAGTGCCAGCCACAAACGTTGGCCAGGTGC 102348 29 96.6 32 .............T............... TAGTCGGGGCAGCCATACACCTGCTGAACCGT 102287 29 96.6 32 .............T............... GGGGCAGTGATGACCCATTACGCTCAATCGCT 102226 29 96.6 32 .............T............... GTTTCAAGGATCAGGTAGAGCAGGACGGCGTC 102165 29 96.6 32 ............................T CAAGGCTTAATCGCCTGATCAAGAACCTTGGA 102104 29 100.0 32 ............................. TCACCCTGGAGTCAGCGGCCTGAGATATTGCA 102043 29 100.0 32 ............................. ATCAGCGCGGCGCAGAACCTGCCATAGCCTGG 101982 29 100.0 32 ............................. ATTTACTTGTAATCATAATTGAGGGAACAACA 101921 29 100.0 32 ............................. TCTGTGGGCAGTGACGGGGCAGGGTATGCGAC 101860 29 100.0 32 ............................. ATTTTTGTAAACAGGATTCAAATGCGCACAAC 101799 29 100.0 32 ............................. CTCAAACGATTCGTTGATATCGCAGCGTGAAA 101738 29 100.0 32 ............................. GAATTTTGACGGGTTACCGTCAAGCAGCAAGT 101677 29 100.0 32 ............................. TAAGGATTGGAATGGCCAGTCTGTCTAGTCTG 101616 29 100.0 32 ............................. CCCGGAATATACAACCTTTACATGGCTAAGGA 101555 29 100.0 32 ............................. TTATTAATAAGGGTTCACGTAAAGGACTTATC 101494 29 100.0 32 ............................. GCCCCAGTTACGCCAATAGCCATTACCTAGGC 101433 29 100.0 32 ............................. TATTACGGCCGTAACACTGCTGTAGGTGTGCT 101372 29 100.0 32 ............................. TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 101311 29 93.1 32 .A.......A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 101250 29 93.1 0 ..........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.0 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : CCCGCACTCACGGGGATAAACCGGGGTTCCAGCACACGCCGCCGTTACTTGATGCGTGTTCCCCGCACTCACGGGGATAAACCGCTTTACAGCAAGTCGCAGCTGCGCGACTTGGAGTGTTCCCCGCACTCACGGGGATAAACCGGTATTGCAATCCTTAGCAGGTCAATCATTTCTGTGTTCCCCGCACTCACGGGGATAAACCGGCCTATGGCATCACTGCAAAGATGGTTGATGGGTGTTCCCCGCACTCACGGGGATAAACCGTAAAAGCCCTGCTTGAATATTGCGCGTGGGAGGTGTTCCCCGCACTCACGGGGATAAACCGTAAATGGCCGATATTGCAAGCCTGGTTGTTAGGTGTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCCGGAGAAAACTATTGCAGAACCAGCTAACGC # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114087-102949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDTT010000008.1 Shewanella algae strain A3/19 NODE_8_length_152010_cov_42.811170, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114086 29 100.0 32 ............................. CTATTAGTAGTAATTTAGATAGAATTACTAAT 114025 29 100.0 32 ............................. TAACATCAATTTGTTTTATCTCGGCTGAATAA 113964 29 100.0 32 ............................. GAAAGCAGGATATTTTTGTAAACATAATTCAA 113903 29 100.0 32 ............................. CCCTCATGTACCCGTTAACGGGTACGCTTTTT 113842 29 100.0 32 ............................. GCGAGGCCGGTTATCAACCGGAGCCGCCAGCC 113781 29 100.0 32 ............................. CGACAATGAGAAAACCACGGATTGACACAAGC 113720 29 100.0 32 ............................. CCAGTAAAAAAGGCCAAATCAGATCAAAAGCA 113659 29 100.0 32 ............................. ACTACCTACTTGGAAGCCATGACGATTTGTAC 113598 29 100.0 32 ............................. CCCAGTCTGGAGTGGCAACGGGCGTGGCTTCG 113537 29 96.6 32 ............................T GCTCTAGAAACAAATTGATATTGGTAACTATC 113476 29 100.0 32 ............................. TATCACCGGTACATTCTTGGTCACGAAAACAC 113415 29 100.0 32 ............................. GTGATGAATGAGCGCCAAGCGCCCCTTCTCAC 113354 29 100.0 32 ............................. CTATTAAATATTTCTACCGCTACGTCGGGGTA 113293 29 100.0 32 ............................. TGCATTTAGACACGAGATGTACAGATCCACTA 113232 29 100.0 32 ............................. CCTCCCAAGATATGAGCGATATAGCTCCTCTA 113171 29 100.0 32 ............................. GAGAGATCCAGGAATACAAAAGTATTCCAAGT 113110 29 100.0 32 ............................. GAAACACTCTGCTGAGTCACTTCGCACTGGTC 113049 29 100.0 32 ............................. CGCCGCACCCGGTCTAGCGTCAGACTTAGCTA 112988 29 100.0 32 ............................. GTTCATTTGTACTTTTGTTCATTAGTCCTTTT 112927 29 100.0 33 ............................. GTATACCAAGTGGGTGGGCGGTACCAAGTTCCG 112865 29 100.0 32 ............................. TGGTTCTCGCCTACCTTGTCCCACTTGCCGGT 112804 29 100.0 32 ............................. GTATTCAATGAAAACTATCCATGAATACCTGG 112743 29 100.0 32 ............................. CTTATATTCAGAATAAAGATCGAATAGCATCA 112682 29 100.0 33 ............................. CGTGACGAAATGAAAACGCTGGCCGAGGCTCGC 112620 29 100.0 32 ............................. GTTTTATTCAGCATGTCTCCCCCTTACTTGCG 112559 29 100.0 32 ............................. GCAATCGGCGGTGCAAAGGTGCACGCCATTGA 112498 29 100.0 32 ............................. GCCTTTTTTAGCGGCGACCAAACCACCAACAA 112437 29 100.0 32 ............................. CCTGCTAGGCGATGATATTGATTGCATAGGTG 112376 29 100.0 32 ............................. GGCGTTAACCCAATGACGCCGGAAGAGTGCGC 112315 29 100.0 32 ............................. CCGCGAGCCGTTCATTATTGGCCTGTCGGTTG 112254 29 100.0 32 ............................. CTCACTGCGGCGCAGCTGCGCCAAACCATTGG 112193 29 100.0 32 ............................. ACGGTCGAGAACGGGAATCTGACCCGGATATT 112132 29 100.0 32 ............................. TTACCGCCCCGGTGTTATGCACTGGAGGTAAG 112071 29 100.0 32 ............................. TGCTCGGGCAATGTTGCGTGCTATGTAAACGG 112010 29 100.0 32 ............................. GCTGCATTTTTCAGTTAATTCTGTCGGGAGGG 111949 29 100.0 32 ............................. GTTGTTTGGGGTTCTCCGAGGGCTACTTCATG 111888 29 100.0 32 ............................. GTCGCCATGAAACGCGACAAACTGCTGCCAAA 111827 29 100.0 32 ............................. CTGGGTACCCATGAGCAAAGACCATCAGCAGC 111766 29 100.0 32 ............................. GCGAGCTGGGTGACTGGCTGTTGCCGTCTGAT 111705 29 100.0 32 ............................. CTGTATGGCTGTTATTATTCGGCTGAAATACA 111644 29 100.0 32 ............................. CTCCAACTCCTGAGTACGTCATTTCTGTAAAT 111583 29 100.0 32 ............................. CTCATGTTGCTCACTCTTGTTTGGGTTCAGAG 111522 29 100.0 32 ............................. GCTTACGTGCAGTAAGCTAAGGATTAATTATG 111461 29 100.0 32 ............................. GTTTTGAGGATGCGGATGCGTTTTTTGGGCGG 111400 29 100.0 32 ............................. CCGACCTCGGCAACCAAACGAGGCCGGCTTGC 111339 29 100.0 32 ............................. TAAATAGCGGCCTAGTTGCCGTTGGGTATTAC 111278 29 100.0 32 ............................. GTAGCAGCCATGGAGCTGCTGCAGTCGAAGGA 111217 29 100.0 32 ............................. ATATGCCCGCGCAGTCTCCAGGCGGCGAGGTC 111156 29 100.0 32 ............................. ATGTAGGATCTGGTAACCCCAGGGCTTGGTGA 111095 29 100.0 32 ............................. CAGCTAAGTCGTTAGGGCTTGGTAAAGGTGGA 111034 29 100.0 32 ............................. CATCAAAGATGCCTTTCAGACGGGCTTCGGTA 110973 29 100.0 32 ............................. GAAACCTTTATGGACTTCAAGAAACTGTTGCC 110912 29 100.0 32 ............................. CTTATCCAAAGAGCCAGCCTTGGCCATGTCTA 110851 29 100.0 32 ............................. GAAGCTTAGATGACTCTGTTGTTAAAACTGCC 110790 29 100.0 32 ............................. GAGCCAATGACATAACCACTCAGCTCGGCGAT 110729 29 100.0 32 ............................. TAACGTTTTGGCCCCGAGAATGGTTGGTGTAC 110668 29 100.0 32 ............................. GTATTCCCGCGCATGGCGGCACTGTAAACCAG 110607 29 100.0 32 ............................. CCTATTTGCTACTTCCGTTTGATGAATGGGCT 110546 29 100.0 32 ............................. TTATGTAGAAGTGCTTTCCGGGGTAGTATGCA 110485 29 100.0 32 ............................. CACCCAAACTTCCACAGTTTCCGCTCCTTACA 110424 29 100.0 32 ............................. CCACCCTGTTCAACTGCCTAATAACCCTATGT 110363 29 100.0 32 ............................. CGGCTAAAGAGTACCAGGAGCAAGTCGAGGCG 110302 29 100.0 32 ............................. CCGAAATCCGCGAACTATCCAAAACCAAAGCG 110241 29 100.0 32 ............................. AACTGCGTTTGGTGTACGTTTGATGATATGTT 110180 29 100.0 32 ............................. CCAGCCCCGAGAAAGATTGGTGAGGTACTGAA 110119 29 100.0 32 ............................. ATTCTATTGATACACTTCTCTGTTATGTTGGT 110058 29 100.0 32 ............................. CAGTATCCGAACGGTTTTCAGGACGTCTGGAA 109997 29 100.0 32 ............................. GCTTTGTTGTAGACACGCCAGAAAACATCACT 109936 29 100.0 32 ............................. ACAGGACGGGGGTTTTCTGGCGCTCAGCTCAG 109875 29 100.0 32 ............................. GCGAACCAATACCGCAGCAAGGCGAGGCCGGT 109814 29 100.0 32 ............................. ATACAGCGGCGGTTCTGTTGTTATCCCAGTTG 109753 29 100.0 32 ............................. TACACCGAAGAAATTCACGAATTGGCACGAAA 109692 29 100.0 32 ............................. GCGGTGATCGCGTAACAAAAACCCTCAGCAAC 109631 29 100.0 32 ............................. TTTTTTTTCTTTCTTTGACTTCGACTTCCACT 109570 29 100.0 32 ............................. CGGCTTGAGTCCCGTTAACGCACTAACTGCAA 109509 29 100.0 32 ............................. CCGGGCAGCCGTGGAACGGCGCCACCGGCAAT 109448 29 100.0 32 ............................. CAGGCGATAGGTTTCATGTTTGTTTTTTTAAC 109387 29 100.0 32 ............................. CCGTGATACTCCTGGTTGTCCTTCATGCTCGC 109326 29 100.0 32 ............................. GGCAGGTCAAAAATGCAACATTAGGTATGTAC 109265 29 100.0 32 ............................. TGATTGGCAAAAATAGATAGACAGCTATTATA 109204 29 100.0 32 ............................. CGCGATGTTGCTATTCCACCAACCTGGTACCA 109143 29 100.0 32 ............................. CTTAAAACGGTACGGATTGAACTTGAGCTGTC 109082 29 100.0 32 ............................. CTCAAGAATGCTTTTGGCGAAAACTCCGATGA 109021 29 100.0 32 ............................. TTATGGTGACTATCAAGACTGGATAACGTGTG 108960 29 100.0 33 ............................. CGTTATCGTTGTAGGCGATTTCAGCGTGTTTAC 108898 29 100.0 32 ............................. GAAAAGCGGCTTGGCAGAGGCAGTCAGGGCAA 108837 29 100.0 32 ............................. TATCGATGAGTAACGTATTACGCTCAACCACA 108776 29 100.0 32 ............................. CATATCAATGCCGACGGTTTTTTACTGCTCAA 108715 29 100.0 33 ............................. ATTTCGCGCCAACTCGCCCAACTGGAAATATCC 108653 29 100.0 32 ............................. CGCCCTGGCGTTACCGATGGTTACCGTGTGTA 108592 29 100.0 32 ............................. CGATCCTAATTATCAGGTGGTGCATATCAGAT 108531 29 100.0 32 ............................. GATTCTTATAATATGAGAATCACTGAATCAGA 108470 29 100.0 32 ............................. CTGCCGGCCTTTAATCCAGTAAACATGCTGGT 108409 29 100.0 32 ............................. CGGTCTGGCAGGAAGGATTAGGGCAAAAAGCG 108348 29 100.0 32 ............................. ATAGGGTACTATGGCCACGTAGACGGCACGAC 108287 29 100.0 32 ............................. ATAGACCATGAAAAAATCGCCAAGCTAAACCA 108226 29 100.0 32 ............................. CGATGAAATGTAATCGGGCGGCAAAAACTCGG 108165 29 100.0 32 ............................. TTAATTTCCATCGGGTTGTCGCGCTCTGTGCC 108104 29 100.0 32 ............................. CCACCGTGACGGTGGTTTTTTACTAGGCGACC 108043 29 100.0 32 ............................. TGACCTACGCGCAAATATTCACGCTTCCTATT 107982 29 100.0 32 ............................. CGCATCATTTTACAAACCGTTTACCTCTCCAA 107921 29 100.0 32 ............................. TTCTGCCGCACCACCAGCCCCCAGGTTGTGGC 107860 29 96.6 32 ............................A GATACACCAAGGGCTAGAGTACTTTTGGCACT 107799 29 100.0 32 ............................. CTCTTGGTCATCCATGAATGCCGTTAGGTGTT 107738 29 100.0 33 ............................. TTTACCGAGGGTCCGTGGGTTGTTGGCTGTGCG 107676 29 96.6 32 ............................T TATGATCTAAGCCTAAGGTATGGCCGACCTCA 107615 29 100.0 32 ............................. ACACAATGAGTTGCATGCATGTGCCGGTATTG 107554 29 100.0 32 ............................. CCCTGATGGCTCGGGTAGTTGCCTGCTTTGAC 107493 29 100.0 32 ............................. CCTGCGGCCAACAATGGGTAGGCCAGGGTGTC 107432 29 100.0 32 ............................. CCTCTGAACTTCAACCATTTACGCCTGAACGC 107371 29 100.0 32 ............................. GGCGGGAACATAAAAATTGGGTTTGTTGGTCA 107310 29 100.0 32 ............................. CTCTTTTGTTAGTGGACGCAGGAGCAGCTACT 107249 29 100.0 32 ............................. TGTTAAATATCACAAATTCACGATTTTAGATG 107188 29 100.0 32 ............................. AGTGGCAGCTGGGCCCGGGGTATTTCTGCTGC 107127 29 100.0 32 ............................. CTTATAAATTAGATAAATAGCTATCGACTTAA 107066 29 100.0 33 ............................. TAGACATATCCGATAACCAGGGAACATCCATCA 107004 29 100.0 32 ............................. AAAAACAAAAAAGTGAAAAGGCGGAAAGAGCA 106943 29 100.0 32 ............................. CGACAGGGGGCATTGCTGTCTTTCCTGTATTT 106882 29 100.0 32 ............................. TCGCCTCGTTTACTTTTATCGCTGGCATGTGC 106821 29 100.0 32 ............................. GATGTTGTTGCCAAATTAAACGAAGTTCTGAA 106760 29 100.0 32 ............................. TCATTAGCTGAGTACAAAACAGAAGAAGAACA 106699 29 100.0 32 ............................. GAGCCCAGCGCGAATACTGGAGTAGTTCACAC 106638 29 100.0 32 ............................. CTCGCTTTACAGATGGCTAGGGATGATTATGA 106577 29 100.0 32 ............................. CATTATTAGAACAATAAAAAATTGCCTGGCAC 106516 29 100.0 32 ............................. TACCATTGCCACAAACTGCTGAATATGTTTTG 106455 29 100.0 32 ............................. ATTTTAAAAATCAGGTTCCTTTTGGTCAGTCC 106394 29 100.0 32 ............................. CAAAACTGAACAATCAGTCAGGACTTTATAAC 106333 29 100.0 32 ............................. CTACGCGTTGCCTGATGACTGTGCTATTTATC 106272 29 100.0 32 ............................. GTTGCCAGACCTCTTTTTACAGGAATATTTTA 106211 29 100.0 32 ............................. CGAAGCGCTGCGGCGCCGCAAGGAGTGTTTAT 106150 29 100.0 32 ............................. CGTCTGAGTAAGGGCACCCGTGCCCGGTTTAT 106089 29 100.0 32 ............................. TTAGCTGCGCCGGAGCTTGGCACTTCAGTAGC 106028 29 100.0 32 ............................. CCCTTCATCATTTTGAACTGGGGCGTACAACC 105967 29 100.0 32 ............................. GTCATTATTGCCATCAGATACGCTCCACCCGG 105906 29 100.0 32 ............................. GCCGTTTGAAAACCATCTATCGCACCAACATG 105845 29 100.0 32 ............................. ATGGTTAAACCAAAATGGTATTGCCGTTGACG 105784 29 89.7 32 .TT..........T............... GTATGAGTTGTTATTCAGCACTTGCAATGCAA 105723 29 93.1 32 .T...........T............... GAATAGCGGGAAAGCGGTTACCTCTGTCATAG 105662 29 93.1 32 .T...........T............... CTCAGATATTCACAAAAATGACATTAGGAATG 105601 29 93.1 32 .T...........T............... CAAGTTGCAGCTGCCACAGTCAAACACGACGC 105540 29 93.1 32 .T...........T............... GCATTCACCAACTCAATGACCAGATTACTGGC 105479 29 93.1 32 .T...........T............... GACGGCGGTTCTCCTCCAATGCCTGTAACGTG 105418 29 93.1 32 .T...........T............... TGACGGGTCGCGCTGGTCTGGCCACTTGAGAA 105357 29 93.1 32 .T...........T............... GCAGTTGTTCGGCAATGGTGATGGTTATCTCA 105296 29 93.1 32 .T...........T............... GGCATACAGTTTGAAAACGGCATTGGCGGAAT 105235 29 86.2 32 .T....T......T.T............. ATGTTGCGGGGCGCATACAGCTGCCCGGCATA 105174 29 93.1 32 .T...........T............... TTAAAGATTTAGTTTTGATTTGGCGCTTGGGT 105113 29 93.1 32 .T...........T............... CTTGCCGACAATGCCAATGACCACGGCGAGTG 105052 29 93.1 32 .T...........T............... ACGGTGGCGGTTGCCGTTCTGGTCGTAGTACA 104991 29 93.1 32 .T...........T............... TCTTTGATTTTACTAACCACACGCTTGTTTGA 104930 29 93.1 32 .T...........T............... GGTGTTCAACCTGGTGACACCGCTACGCCGGA 104869 29 93.1 32 .T...........T............... CCAGCCTTTCATCCCTTTTACTTGGGCGGAGC 104808 29 93.1 32 .T...........T............... GCTGTGCGCTCACGCGGCAATAACCCCGCTGC 104747 29 93.1 32 .T...........T............... TCATTGATTCGTATATGTTGCTTCAATGTTGG 104686 29 93.1 32 .T...........T............... CAAAAATGGCAGACGTCAAATATCTGGGAATG 104625 29 93.1 32 .T...........T............... AAGAATGTTTAGCACAATCAAGGCATACATTT 104564 29 93.1 32 .T...........T............... CTTATAACTGCGGGCGTCTACTTAGTTTACAG 104503 29 93.1 32 .T...........T............... TCTGTTGGCGCTGCGTGAAGAAAAGTGTCTTC 104442 29 93.1 32 .T...........T............... TTAATGCAGCTCAAAGAAGCTCTGCAAAACTA 104381 29 93.1 32 .T...........T............... GAACAGTTGGCAGCCTTGGATCACATGAAGAA 104320 29 93.1 32 .T...........T............... CTCATTCAGATTGAGTTACGTTGTCAGTATAG 104259 29 93.1 32 .T...........T............... GCCCGCTGTTTTGCCTCGTTCACACGCTCGGA 104198 29 93.1 32 .T...........T............... ATATTTACTGCTCAATGCAACACCGTCTTCAT 104137 29 93.1 32 .T...........T............... ATATGGTCGCCCCAGGAGCTTCGCGGGCAGTT 104076 29 93.1 32 .T...........T............... ATCAAAATAGTTGTCGGTATCGAGGCACTTGG 104015 29 93.1 32 .T...........T............... CTCTGCGTCCAGCGTGTTATCAACATCAGCCG 103954 29 93.1 32 .T...........T............... CGCAAACTTTCGCGAGGCTGACCTAATAAGAT 103893 29 93.1 32 .T...........T............... TAAAAGCCCTGCTTGAATATTGCGCGTGGGAG 103832 29 93.1 32 .T...........T............... TAAATGGCCGATATTGCAAGCCTGGTTGTTAG 103771 29 93.1 32 .T...........T............... CCGGAGAAAACTATTGCAGAACCAGCTAACGC 103710 29 93.1 33 .T...........T............... CGGGTCCCTCCCTAACCAGCATCTGCCACAGGA 103648 29 93.1 32 .T...........T............... CACAGGAAATATCTGCATCGCTTGGCATTAAG 103587 29 93.1 32 .T...........T............... ATAGCTTAGGCAGTAGGGGAAGCGTTGGAATG 103526 29 93.1 32 .T...........T............... ACGACCATCGCCAGTGTCTTCATCGCGATAGG 103465 29 93.1 32 .T...........T............... GCAGTTATCAATGGCTGAACTCGCTCTGATTA 103404 29 93.1 32 .T...........T............... ACCGCAATCATTGATGCTAAATCAATGAATCA 103343 29 93.1 32 .T...........T............... GCTGAGACTGCCGATATACCTATCGCTCAACG 103282 29 93.1 32 .T...........T............... GGGTTCCAGCACACGCCGCCGTTACTTGATGC 103221 29 93.1 32 .T...........T............... CTTTACAGCAAGTCGCAGCTGCGCGACTTGGA 103160 29 93.1 32 .T...........T............... GTATTGCAATCCTTAGCAGGTCAATCATTTCT 103099 29 93.1 32 .T...........T............... GCCTATGGCATCACTGCAAAGATGGTTGATGG 103038 29 93.1 32 .T...........T............... TAAAAGCCCTGCTTGAATATTGCGCGTGGGAG 102977 29 93.1 0 .T...........T............... | ========== ====== ====== ====== ============================= ================================= ================== 183 29 98.1 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGAGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TAAATGGCCGATATTGCAAGCCTGGTTGTTAGGTGTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCCGGAGAAAACTATTGCAGAACCAGCTAACGCGTGTTCCCCGCACTCACGGGGATAAACCGCGGGTCCCTCCCTAACCAGCATCTGCCACAGGAGTGTTCCCCGCACTCACGGGGATAAACCGCCCAAGCGCAATGGCGGCTTTAAGGTGCTCAAGTGTTCCCCGCACTCACGGGGATAAACCGCCGCCTACCACCGCATCAACATCTGAAGCACTGTGTTCCCCGCACTCACGGGGATAAACCGGCCTTAAAGATAAGGTCTGGTATCGCTCTGAGGTGTTCCCCGCACTCACGGGGATAAACCGTGCCCTAGTTCTGATTGCACAGCCGCAGCGATGTGTTCCCCGCACTCACGGGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCACTCACGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //