Array 1 1490451-1493418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012359.1 Thiopseudomonas alkaliphila strain C6819 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1490451 28 100.0 32 ............................ ACTCTGCCGAGTAGGGCAGGGTTTTTAGGGCT 1490511 28 100.0 32 ............................ AGAAGTCACAGAAGGCAAAAACCCCGATGTTC 1490571 28 100.0 32 ............................ GATAAAGCGGGTTATGCGCAGTCGTTCATCAG 1490631 28 100.0 32 ............................ GTTAGCCCAAGAGCTTGGTGACGACCCTAATT 1490691 28 100.0 32 ............................ GCTGAATAACCAATGCATCCTCTTGGTCCTAT 1490751 28 100.0 32 ............................ AGCCGAAGTCGCCAGGTTTGATCGGAAACCGA 1490811 28 100.0 33 ............................ AAACTAAAAGCTTTGGTCGAGGGTTTTAACGAT 1490872 28 100.0 32 ............................ AGCTAGTCCGAGACGAGAATGGCGAGTTCTGG 1490932 28 100.0 32 ............................ TTGGTACGTGTCCGCTGATTCAACGGACGGGA 1490992 28 100.0 32 ............................ GACACATCTTCGGGCACTGGTTTTTTCCCTGA 1491052 28 100.0 32 ............................ AAGAACTCCGGCAGTATCAATTATAACTAAAT 1491112 28 100.0 32 ............................ TTTGACTGCTTTAGCAGCTCAGCATTTATACG 1491172 28 100.0 32 ............................ AATAAAAGACTCTATTACCAATAAAGAATCTA 1491232 28 100.0 32 ............................ ACTCCCAGACATTCCCAACAAGATCAGCGATA 1491292 28 100.0 32 ............................ AAGGATGAATTGCCGGTGTTAACGTCATCCCC 1491352 28 100.0 32 ............................ AGCGCATTAAAGGCTGTTTTTCCTGCTGTGGC 1491412 28 100.0 32 ............................ AACACGCTGCAAGTCTTTAATCTGCGCAGAAG 1491472 28 100.0 32 ............................ ATATCCAGCATGACAGCAGAATCCTTTCCGAA 1491532 28 100.0 32 ............................ CACATTAATGATTGCTGGATTTTCACTCTCTA 1491592 28 100.0 32 ............................ CTTGGTCGCCCTTGTCGCCTTTTTCGCCCTTA 1491652 28 100.0 32 ............................ ATGCCTAGATCGGGAATACCCATCGTAAGCAA 1491712 28 100.0 32 ............................ ACTGTGTCGCCAGTTTTGACTACACGCTTAGC 1491772 28 100.0 32 ............................ AGTCCCTGACATTAGGAGATCTAAAACTAATC 1491832 28 100.0 32 ............................ AACCCATTACAAGGTTGTATAGCTCGGTTATT 1491892 28 100.0 32 ............................ TATACGTCAAAGCAGAACAAGGTCTTACCTTG 1491952 28 100.0 32 ............................ ATTCATAGAGTATCTGTCTTTCGTGAAGTCTG 1492012 28 100.0 32 ............................ CGAAAGCCTATGCGCTAGATAAAGGTCTTAAC 1492072 28 100.0 32 ............................ AAGCTGCAGCTGAGTCCGAGTCAAACGCAAAG 1492132 28 100.0 32 ............................ ACGACTCATGATCTACCCTCTTAAAAATCAAC 1492192 28 100.0 32 ............................ ATCACCTGGCTTGCCGTGGGTGTCTTCTTAGG 1492252 28 100.0 32 ............................ GTTCAGGTATTTATTGATGGTGGTGATATATA 1492312 28 100.0 32 ............................ TGGTAGCCAATCAAGTTAAAGTTCTGATCCAA 1492372 28 100.0 32 ............................ TGAAGACGGATTGTACACTAAAGGTCGTGTTG 1492432 28 100.0 32 ............................ CACAATGGATAATATCAACGTCTTTATGCGTG 1492492 28 100.0 32 ............................ AGCCACTCTGACGAGTTTTATTACACAGCACT 1492552 28 100.0 32 ............................ GTAAAGATTCACAAGTGGCGATCCGCAGTCGT 1492612 28 100.0 32 ............................ GTCGGCAACAAACGTGGTGATTGTGTGAATAT 1492672 28 100.0 32 ............................ AGTGACTTGCCTCCTGTACGAATGCCGCACAA 1492732 28 100.0 32 ............................ GAAAGTCGCGCGGTAGTTGTCGCCAGCTTTAA 1492792 28 100.0 32 ............................ AAGAAGTGATGTTATCAATCAACGGTGAGGCG 1492852 28 100.0 32 ............................ AGCAACTAATAAGAAGCCATCTTCTTGCTCAC 1492912 28 100.0 32 ............................ AGGATAAGCCGCACAAGAGCTAGAGCCGCAGA 1492972 28 100.0 32 ............................ AGCTCTTTCAGCTCTCGGCCGCTCATGTGGTT 1493032 28 100.0 32 ............................ GGATTTATGCGAGCCATCGGCTACTAAGAAAA 1493092 28 100.0 32 ............................ AATCCAGTCACTGGATAAGATCAAGGAAACTT 1493152 28 100.0 32 ............................ TCTCCGCGATAATCGCTATCAATCACGCCCAC 1493212 28 100.0 32 ............................ TGCAGCAACCTCACCAAATAGCCCCATGCCCT 1493272 28 100.0 32 ............................ GGCACCGACAGAAATCATCCTTACAATTTTAA 1493332 28 100.0 32 ............................ ATAGACCTGCTGCATTAGTTGAGCCTACCACT 1493392 27 89.3 0 ....................-.A..T.. | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.8 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ACCGAGCTAACCGCTTTACACCAGAGTCATTGGTTATCAGGTATGCAAGACCATGTGCTGCTAGGTGCAATTCAAGCGGTGCCTACTGATGCACAACAGATTGCTGTGCGTCGTGTTCAAGCCAAATCCAGCCCTGAACGCTTAGCTAAACGCTATGCACAACGACACAACATTTCAGAGTCAGAAGCCTTAGTGCTTTACCAATCGGTAAAGCCTAAAAAACTCAAACTGCCCTTTTTAACCCTCAACAGCCAAAGCACTGGGCAACGATTTACCCTGTTTATTCAACAGAGTAAACCTCAGTCTCAATCAGTGGCCGGCACCTTTAATCGCTATGGATTAAGTACCTCAGCCACTGTTCCCTGGTTTTAACCCTTTTTTCTTTAGAGTACAGCAAGCTAAGTAAATCAATGACTTACGCTTGCTGTATAAAAAAGGGGAAAAATAAGCAATTTAGCTGTAGCTCTTTAAAAATAAAGGTTTTAGCGTAAAATCTGCTA # Right flank : ACACACTATCAAACAATCCCCGCCTCTAAACTGGCGGCCATGGATAAGCCTAACTCTTCGCATTGCTGAAGAAGCTCGGGTTTAAAATCGCCCAAGCAAATCAGCGGTTGTTGGACGAGTTTCCAGCGTAGGCCTTGCGTGATGCTTTCGATGGCGCGGCGGGTGCCGGTACCGTCTAATCCGGCGCGGATATAAAAAGCAAAGGGCAAACCTTCGGTGTGTTCAATGCACGGGTAATAGCAGCGATCAAACACATCTTTCACTAGCCCTGCCATATAGCCAAAGTTTTCGGTGGTGCCGATGATGACCGCATTGGCGGCTAAAATATCTTCAGGCTGGGTTTCTAGCGGAGCTAACACCTTAACCTGAATATTCTCAATATCAGGATGGGTTGCGCCCTTAACCACTGCATCGCGCAGTTGCTGGGTATTGGCTGAGGGCGCGTGGGCGATAATGAGTAAGTGCTTAATATTAGGCATAAGATAACTCCTCAACTAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //