Array 1 2883160-2882713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050150.1 Hafnia alvei strain A23BA chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2883159 28 100.0 32 ............................ AGTAACAGCAACAGTAGCCGCGCCAGTGCTAG 2883099 28 100.0 32 ............................ TATCGCACCGAATTGCTCAGGGGTGACGTAAA 2883039 28 100.0 32 ............................ ACGATAAAATGCCCCGTTGGTTGATTCTTTGG 2882979 28 100.0 32 ............................ TACAGATAAAAATCACGGCGTGGGATTAGTGG 2882919 28 100.0 32 ............................ TTCTTAACCGCCTCGCGACCAGTTTGTGCTTC 2882859 28 100.0 32 ............................ GCGCTAGAAGGGCTAATGCAATACTTAAAGTT 2882799 28 100.0 31 ............................ AATGCAGCACGCTATGGGGGGGCCGGTGCTG 2882740 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAGCAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGTGTTAATCTGCCCCCATCTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTTCGCCTATTTATAACCCTTTGATTTTATGTAATAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : TTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAACTCACAGGGATGATATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCAGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGTTCACAGGACATTGGGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAGGGAGAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2954947-2953539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050150.1 Hafnia alvei strain A23BA chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2954946 28 100.0 32 ............................ TCGACGAAGGATATGAGCTAACGCTAGAAATT 2954886 28 100.0 32 ............................ GTGAGGCTAAACACCGTTCGCCTGATCCCCGT 2954826 28 100.0 32 ............................ TATTTTATACGTCAGACTTCTGTGGGTTAACG 2954766 28 100.0 32 ............................ TTTTAGTGATGGATGGCTAACTGTCTGTACGC 2954706 28 100.0 32 ............................ TATACACGAGGACAATCACGCGATTTGTTGGA 2954646 28 100.0 32 ............................ GTGTCACCAGCAGTGATCGCACGTGAAACCGC 2954586 28 100.0 32 ............................ ACAAAACCATTGCAAATAGCTTGCTCAGTTCA 2954526 28 100.0 32 ............................ TGCACGCTGCATGAGCTTTAACTCGCTGTAGT 2954466 28 100.0 32 ............................ TTGGTGATATTCTGCTAGCGGCTGGTTCGCTG 2954406 28 100.0 32 ............................ ACCATTTCTGGATTCTCGATACCTGCGGACAT 2954346 28 100.0 32 ............................ TTGAACGCATGAACCGCATAGCTGGCCTTGTG 2954286 28 100.0 32 ............................ ATTGATGGAAGTACACAAATTAGTATTAGCAA 2954226 28 100.0 32 ............................ CGGACAGCTGACGGGGATGTCAATTTGCATCC 2954166 28 100.0 32 ............................ CACAGCGAATACCGCGTCAAATGTTGATAGAT 2954106 28 100.0 32 ............................ TTTCGGCTTTTATAAGCGCTCATATTATTTAC 2954046 28 100.0 32 ............................ TCGCTTCTGACAACATGAGCACAGAAGACGAT 2953986 28 100.0 32 ............................ GAGCCTAGTTAAGCGTGAATCCATCCCTTGCC 2953926 28 100.0 32 ............................ TGACTTAATCCATGCATAACCGGTATTCAAAC 2953866 28 100.0 32 ............................ ATCCAGTGCGCTACTGATTGCTTAGTTGATTG 2953806 28 96.4 32 ...A........................ AGCTGACGCCGTCACGCCACCCAAAACCCGAG 2953746 28 96.4 32 ...A........................ GGCGTATTGAAAGATGCGTTACTAGTCATAGA 2953686 28 100.0 32 ............................ TTCAACAAAGACTTTGCTGCGATCCGATGACG 2953626 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 2953566 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCAGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAATCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //