Array 1 129296-131268 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYS01000016.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_11.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 129296 29 100.0 31 ............................. CAAAGTTAACGTTTATAGGCTTTGTCTTGTT 129356 29 100.0 31 ............................. ATATCCTTAGGGCTAATACTCATAATTGAAC 129416 29 100.0 31 ............................. CACTAATGGTGCAGAAAGGTATTGCTGGTAC 129476 29 96.6 31 ............................A GTTCAGCGATTCTAAAGAGCCGCGAGCTTAT 129536 29 96.6 31 ............................C CTCTACGGCGATACGTGAATAACCTGACAAT 129596 29 96.6 31 ............................A AATAGAAAGGCACGCTGCCAGATAGGAAAAT 129656 29 93.1 31 .A..........................A TCCTGAATCAGCTTCATGGACTCCTGCATAA 129716 29 96.6 31 ............................G TGATGCGCTTTTGAATGCTATAAGTGCGGGA 129776 29 96.6 31 ............................C AAGATTGGAAGTATTCTGCTTGCTCCCAATC 129836 29 100.0 31 ............................. CTGTCCTGACTTTATTGATGAGCAAACCGAC 129896 29 96.6 31 ............................C AATGGCAGATTGCCGCATAGGAATTCAGTAT 129956 29 96.6 31 ............................A GCTAATCGGTAAGGCTCTTTACGGTAGGCTA 130016 29 100.0 31 ............................. TAGCCCTACCCTAGTCTAACCTTTTGCTGAG 130076 29 96.6 31 ............................A AGGTGGCCGATAAGGCCACACGCTTTAAAAT 130136 29 96.6 31 ............................G TAGGTAAAATCTGTTATTCGTCGGTTATTGC 130196 29 100.0 31 ............................. AATTGAAAGGGACCGAAAAGGCGCTTTTGGA 130256 29 100.0 54 ............................. GACTCATATATCTCATATTGCAAACAAAAAGCTGAACCGCCGCATAGTAATACC 130339 29 100.0 31 ............................. TATGATAGATACTATTCTTTGTACCTCTCTA 130399 29 100.0 31 ............................. GAGTTAACCAACGTGTTAACAGTAGCCGAAA 130459 29 100.0 31 ............................. ACATGATATAGCTCTACCTCTTAGCTCTACC 130519 29 100.0 31 ............................. AACAACTCGTTAACTCGTAACTCACTACTGG 130579 29 96.6 32 ............................C AATAATAGATTTACCGTCTGGGATTTCGTCGT 130640 29 100.0 31 ............................. ACGGGAAGCGGATTATCGTTGAATCTAATCA 130700 29 96.6 31 T............................ GAAGGCTACGGGCGCTACGGTCAGGGGGGGT 130760 29 96.6 31 ............................C ATTAACGGCGGTGAAAATATTACGGTTAAAG 130820 29 96.6 31 ............................A GTCACAGACGCAGCACTCCGAGAAACTCAAA 130880 29 96.6 31 ............................A CACTTCACCAAGCCGTGATAATTTTTTATTC 130940 29 96.6 31 ............................A TAAGGTTTTGCGCCTGACTCATGGCATTTGC 131000 29 96.6 31 ............................C CCATCGTTCAGCTTAAATGTTTTTCCAGACC 131060 29 96.6 31 ............................A GACTCACAGGAGAATATTTATGCGTTTATCA 131120 29 89.7 31 ......T......C.......C....... ATTTAACCTATAAGCCTAAGGTAATCTCTTT 131180 29 93.1 31 ..A.........................G TATATAGTATAGGCCGTCCGTTCGGCTCTAA 131240 28 75.9 0 ..A..........C....A..CC.-...C | C [131266] ========== ====== ====== ====== ============================= ====================================================== ================== 33 29 96.8 32 CTGAACCGCCGCATAGGCGGCTTAGAAAT # Left flank : ATATGCGGTGTTCGTTCGCAAACATGCGAAATCGCAACGTGATATTGAACGAAAACGTCAGCACCTATTGAAGAAGGCCGGTGGTGAATGGAATGAAATAGCGCAGGAAAGTATGGATCGCTTTATGGATAAATTGTACTGCAAGTTACCTTTTATCTATCTGACCAGCCATAGCTCGATACCGGCTAAAGGCGAGGAGAAAAACCATTTCAGCCTTTTTATCAGTAAGGAAAACGGCATGCTGATGAAAGGAAAATTGACAAAATATGGTTTAAGCGACCCAACACACAAAACCAGCGTACCTATTTTTTAACGATTGAAGTTCTAAGTTCTTTAATAAATAGGCTAGAAGTGCCATAACCCTTTTTTTAGCGATAAATTAATCATTAGATAAAACAGACGGTTAAGAAAGTCGCTGAAAAAAAGGGTATTTGACTTACCAAAATAGAACATCCCAGAGGCAGCAATGCGTCTGGGGTGATTTTTTATTGAAAAGTCTA # Right flank : CAAAAAGCGCGCCAATGATAAAACTCACGGCGCGCTTTTTGTTCTCTGATAATGCCTCTATTCGACCAGACTATTAACGCCCGAACTTTTGCAGGGCGGTTTCCAGCGCTTTGCGCAGCAAATCACGATCGTGGCGATAGGGGACGTCGTCGGCTTCCAGCGGTTGCTGAACGATCACCTTATTGGTGATACCGGCAATATTGGTCTGAGGACCAACGATAACACCGTCTATTTTGCGGCCGTTAATCGCCTCTTCAACAATGGTCATTTTTTGCGTCAGGGTTAATGATGCGGCTGCCGGGCTGAGCTCTTTTGCTAAATTGCCGATATAGATAATTCGTGCCTTGCTGCGGCCAAGGGCCTGAGCCAGGTCGCCTAACAGGAGCGGCGGCATCAGGCTGGTCATAAAGCTTCCGGGGCCAATAAGAATTAATTCAGCTTCTTCTACGGCCTCGATGGCTTCTCGGGTAGTGCTGACTACCGGTTCCAGCATCAGCTCT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 135638-137586 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYS01000016.1 Budvicia aquatica DSM 5075 = ATCC 35567 strain DSM 5075 YWEDRAFT_scaffold_11.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 135638 29 96.6 31 ...........T................. CATTAGAGGGATAGAGGGATAGACCCCTTCA 135698 29 96.6 31 ...........T................. AAGCATGAAGGATCAGAACCGGTCAGAGATT 135758 29 93.1 31 ...........T................T TAACTCAGCTTTGCGTTGCTCAAATCCCCAA 135818 29 93.1 31 ...........T................C GATGATTGGGAAGGTTACAAGTTTGACCATA 135878 29 93.1 31 ...........T................T CACCGATTTTCTCTGTAAGCTCTTTCAGGGT 135938 29 96.6 31 ...........T................. GTTATGGCCATCAAGATTGGACCACCTCCCC 135998 29 96.6 31 ...........T................. GCAGAATCACACCATTCGCAACTTGTATTGT 136058 29 93.1 31 ...........T................T GAAGAGAGAAGAGACATAGAGGTACAAAGAA 136118 29 93.1 31 ...........T................T GCTCCACGATGAAGTTAACAGCATGAATACG 136178 29 93.1 31 ...........T................T AAGCGGTTCATGAGAATAGTTAATGAAATGA 136238 29 96.6 31 ...........T................. ACCCAAGAATGACCATCTGAGCCCCAACCAC 136298 29 93.1 31 ...........T................C AATGCTGAGTTAATAGTAAATGATGAGAAAA 136358 29 100.0 31 ............................. GTATCACTCAAGTTGAGTCCATATTGGTTTG 136418 29 96.6 31 ............................T AAAGCCTATTCAGTGAATAATTAAACGCTTA 136478 29 96.6 31 ............................G TAAAGCTCTGGGCTACATGAATCAACGCTAT 136538 29 100.0 31 ............................. GTTCGTGTGAATACAACGATGCAACCAGGAA 136598 29 96.6 31 ............................C TCAGTGCTGTTCGCTTTTTCAGCGTTGGCAA 136658 29 96.6 31 ............................T TTGATGCATCCTCTAACTTCCCTGCTAGCCT 136718 29 100.0 31 ............................. GTGCAGTTACCGCCTGTTTCTTTTCGTTCTT 136778 29 100.0 31 ............................. AAGGCACGTTCGATAGCTCGGACATAATGAA 136838 29 96.6 31 ............................G GATGTATTCAACCGGAACGGTTACGCAACGC 136898 29 100.0 31 ............................. GAACCTGAGAAACTAACTGGTGGAAAGCGGA 136958 29 100.0 31 ............................. GGTCGCGAACTCGCATTGATGATATCTCTCA 137018 29 96.6 31 ............................T TTATATAGGGCGTTGTGAAATGGGCCAGCTT 137078 29 96.6 31 ............................T TATCGACTTTGACCTCCGCTTTCTGTTCCAG 137138 29 96.6 31 ............................C AAATTCCAGGGTCACCTTTCGGTGGCCTTTT 137198 29 96.6 31 ............................T AATGGACACGTTATCTCAGGGGGCTTAATGA 137258 29 96.6 31 ............................C ATGCTTCAGCATGCTTGAAACAGTCATTGAA 137318 29 100.0 31 ............................. TGATTTACCCGTTGCTGTGTAGGCTCCTCCG 137378 29 96.6 31 ............................G ACGACAAACCCGACATGACCACCGCCATTAC 137438 29 93.1 31 ...........T................G GAATTCAATCAACTCGCTTCGAATCAGCCAA 137498 29 93.1 31 ...........T................T GTACGGAGCCAACCTGAGCGGAGCCGACCTG 137558 29 89.7 0 ..............C......C......T | ========== ====== ====== ====== ============================= =============================== ================== 33 29 96.2 31 CTGAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : CATGACTGAAAAAGCACTGGCTGAGATTATTGATTTATCCCGCCAGCGCTGGCCTCTACAGCGGGTGAGTGTTATTCACCGTATTGGTGAATTATTTCCCGGCGACGAGATTGTGTTTGTTGGCGTAACCAGCGCCCATCGCAGCTCGGCTTTTGAAGCCGCAGAGTTTATTATGGATTACCTGAAAACCCGCGCGCCTTTCTGGAAGCGCGAAGCCACGCAAGAGGGCGATCGCTGGGTTGAATCCCGCGATAGCGATAAGCAAGCCGCCGAACGCTGGTAATCAAGTTAAGTCCATCAACGGTTAGCAATGGGGTATATCTTTATATCCCATTGGCTCCGGTCAAAGACGAGCTATCACCCTTATTTTCGCTATAAATATAAAGCCAATAAAATCAGCCTATTATGGGTGGTTGATAAAAAATGGTATTTTAGCTATAGCGATCCCAATTTCCTGATGTTTAGCGGCGTCAGGCGGTGTTTTTATGCTAAATTCTCTA # Right flank : TACGCCATAAATTGGCCTCTAGCTCGGTTACCCAATATCCCGCCCCAGCAACCAACAATCCCACCACCTTGGGTAAACATCCGCAGGGGAAAATGTTACTATTCGCACGCCAGTTTTTGGGGGCGTCAGGCCGCTTGTTATTTCATCAGGCTAAATGAACTTTCCCCCGCTAATGATGATTTTTGATAGAGGTTTTTTTCATGACACGCGTTGCAATGGTATATCACAGCGGATACGGACATACGGCAAAGGCTGCTGAGGCAGTAGCTAAAGGGTTAATGGAAATAGGCGGAACCCATCTTGATATGCTTCCCATCGATGCAGAAGGTAATTTGCCCGAGGCTGCGTGGGCTATACTCTGTGCCGCAGACGGCATTATTTTCGGTAGCCCGACCTATATGAGCGGCCCGTCATGGCAGTTTAAAAAATTCGGCGATGCCTCTTCAAAGCCGTGGGCTGCGCAGCAGTGGAAAGATAAATTGTTTGCCGGTTTCACTAAT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : CTGAACCGCCGTATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //