Array 1 482335-484021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJW010000003.1 Listeria marthii strain FSL W9-0586 NODE_3_length_489437_cov_93.465872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 482335 36 100.0 30 .................................... TTCTTCTTCGTCTATTAACTCGCTCTCGTC 482401 36 100.0 30 .................................... ACCCTGAAACAAGCCCATCCAGCGTTGAAG 482467 36 100.0 30 .................................... AGCAAAAGCAATCGTTTGCTACAAGCCGAC 482533 36 100.0 30 .................................... TTTATATTACAGAACTGTTACATATGTATA 482599 36 100.0 30 .................................... TCGAAAGCATCCAAATACGTTTCTAAGAGA 482665 36 100.0 30 .................................... TAATAATTGTATGCCCGCATCAATGATCGC 482731 36 97.2 31 ...................................A CAGATGGTCACGAGGAATTAATCGACGTCAA 482798 36 100.0 30 .................................... CGAGGTCGCTGTTATATTCAGATGTGATAA 482864 36 100.0 30 .................................... ACGGTTTCCTCAATATCCCCGATAACGACC 482930 36 100.0 30 .................................... AAAATATGATATTTGCTATAGCAATGTACG 482996 36 100.0 31 .................................... CACTGCTGGTAAGCATAGTTCAACCGGGATG 483063 36 100.0 30 .................................... CGTGTGTAAATCTCGTAACTGCTAATTCTA 483129 36 100.0 30 .................................... TGAAAAACATAACTTTGAAATAAGTGAAGT 483195 36 100.0 30 .................................... ATCTAGAAAAAACAACTCATGTAATAGCGC 483261 36 100.0 30 .................................... AGCGCTCCTTTTAATTCCTCCACTAATCTT 483327 36 100.0 30 .................................... AGGTAAAACAGCTATCATCATTGACCACGT 483393 36 100.0 30 .................................... ACGTGTTGTTGTTTTCTATCGGAATTAATA 483459 36 100.0 30 .................................... GTATATCCCAGTCGACTATTGCCCTTGGTG 483525 36 100.0 30 .................................... GGACTATTCCGACTATGCGAGGGGTGGTTT 483591 36 100.0 30 .................................... ACGGTTCTAGCGCATCTAATCAAATAAACA 483657 36 100.0 30 .................................... ATCAATGATTGTCTTCTTATCTGCATTAGC 483723 36 100.0 30 .................................... TTCTTTTGAGCATCGTTATATTGAGTTAAT 483789 36 100.0 30 .................................... CTGCCCATGCAGCTTTATGCGTGTCTCCTA 483855 36 100.0 30 .................................... TCAAGCTGCATTTAATCAAAGTATTCAAAC 483921 36 94.4 29 ................G.................C. ATCTGATGAAGATAACTACGTTGAAAAAA 483986 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATTTGGATTTTTTAAACTTAAATTTCGAAGTAAACATCGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAGATTGCTATAAGCGAAGGAGAATTACCATTAAAAGGCGAAGTGCAAAATAACGATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAAAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGACAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 658858-658508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJW010000001.1 Listeria marthii strain FSL W9-0586 NODE_1_length_917218_cov_73.685042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 658857 29 100.0 34 ............................. TTGAAACCAGATGCATTATTTACTCCTGTCATTT 658794 29 100.0 35 ............................. AACAAAAACACGTTATTTGTTCGATGTAATGTAAA 658730 29 100.0 36 ............................. GTGTAATACAATAGGCGTGTAAGTACGAAGAGTTGC 658665 29 100.0 34 ............................. TTTATTTAGTTCCTCCTTCTCATATTCCAAACAT 658602 29 96.6 37 ..............T.............. AGTTTAGATGCTTTGCTAAATCAGAAAGAGTTCATTA 658536 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 35 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : CCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAAGTGGGAGTGGTTGGGATTAGGGAAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TAATGTAAACTTTCTTGTGGGATTCCAGCTGTTTTCGGTTTTAAAGTACAAGGAATGACATTATAAATGTGAAAAGAAAAAATCCAACTATATCCACACCCAAATCATCCATATAATCAAAAAAAGCGTGACTGCCAAACTAGCAGTTACGCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTCCTCTTCGGAAATAAAATTATATGCTTCCACTTCTCCTAAATTCTCAAAATCCGAAAGAGTAGCTCCCGTTTCTTTCAAATCTTCATTAAATTTCCCGTAGCTCATACTAATTATCGAACTTAGTTTTTCACTGTCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCCTTCTCAAGCGCGATATAATTCTCAATAGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAGACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //