Array 1 118804-117309 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHE01000005.1 Salmonella enterica subsp. enterica serovar 6,7:lw:- strain BCW_2112 NODE_5_length_367652_cov_0.717986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118803 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 118742 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 118681 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 118620 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 118559 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 118498 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 118437 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 118376 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 118315 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 118254 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 118193 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 118132 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 118070 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 118009 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 117948 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 117887 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 117826 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 117765 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 117704 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 117643 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 117582 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 117521 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 117460 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 117399 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 117338 29 96.6 0 ............T................ | A [117311] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136462-135090 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHE01000005.1 Salmonella enterica subsp. enterica serovar 6,7:lw:- strain BCW_2112 NODE_5_length_367652_cov_0.717986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136461 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 136400 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 136339 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 136278 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 136217 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 136156 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 136095 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 136034 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 135973 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 135912 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 135851 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 135790 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 135729 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 135667 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 135606 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 135545 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 135484 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 135423 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 135362 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 135301 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 135240 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 135179 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 135118 28 93.1 0 ............T............-... | G [135098] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //