Array 1 13083-14157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLZ010000029.1 Roseburia faecis strain BSD2780061689_150309_B4 NODE_29_length_29070_cov_22.09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13083 36 100.0 30 .................................... CATATGGATAGTTACACTCTCCAACATCGG 13149 36 100.0 30 .................................... ATCAGGCGGTTGTGTCAAAACTTGACGGCA 13215 36 100.0 30 .................................... CTCCATCCCTCTTTTTTTGCCGTAAAATGG 13281 36 100.0 30 .................................... AACGATAGAGTACAGAGTGAGAGATATTAA 13347 36 100.0 30 .................................... CCTCTGCGGTTATTTTAATTCAAAGGCATA 13413 36 100.0 30 .................................... TGCTGCGTGATACACCCGTACTTGCGGACA 13479 36 100.0 30 .................................... TTACAAGAAAGCCGACGAGCTGACCGAGGA 13545 36 100.0 30 .................................... CCGCGCATTATGGTATCAGTTGCCGTTGCT 13611 36 100.0 30 .................................... GCGGAGCAGATACAGTCCAAACCGGAGTCA 13677 36 100.0 30 .................................... AGTCGTGTTTTTCCGGATCCCTTCACCCTG 13743 36 100.0 29 .................................... AAGAGAGAAAAATTACTCAACAAAAATCC 13808 36 100.0 30 .................................... TTGTTCATTGTGCGGACAAAGATTGCCGGA 13874 36 100.0 30 .................................... AGACTTGGACAACTTAACCGGACAGATGGA 13940 36 100.0 29 .................................... AAGCTATTAAGTTTGAATTCCAAGTTATG 14005 36 100.0 30 .................................... TAAGAGTTGAAAATTATATCTCCGGTATCT 14071 36 97.2 16 ...................................T ATGTTGTGGAAGATTA Deletion [14123] 14123 35 86.1 0 ............-..T................G.TT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.0 29 ATTTTAGTACCTAAACAAATTACGTGACTGTAAAAC # Left flank : CAAGAAAAATGTTGATCATAGTAGAGAATATTGACCATTTAATTTTGCCAAAAGAGTATGATGAGATTTTGGAGAGAATGATACAAATTGGCGAAAAATACGATATATATTTTGTTTTGTCAACAAGTCTGGAAGGATATGTGTGCTGTGACAGAAAATTGTGTTCGGGGATCACGGTACTGGGAGAAGTGGATTTTCAGATGCCGGAATTTGAGGATATAGAAACATACGTGGAGAATAATTATCCATGCAATAAGAAAATATCGGAAGAACAATTGCAGACTGATTTGCAGAAGATCATTCAAAAGATAGGACAGGGTGGATATTTATATACGGTGGAAGAAAACGTTATATGTAAGCTGATTAATCAAACATTGATGCTGAATGATAGGTGGAAAGATGAGGAAAAAATGCCTGAAATGGCTTTTTTAAAAGCTTGAAAAATGATATAATGAATCTGAAAATGATGGTATACAAAAGTAGGGAGTGCTAAATTTGAT # Right flank : TAAAACTAAAATTAGTTTGAAGATGAGATTTGTGAACTCTCAAAATTTTATAAGTAATGGAGCAAAAAATACCCCTGCATAAATTGTCAAATACAAGAATGCAGGGGTACTTTTTATAAAAATATATTTGAAACCATTTAGGAAGATTAGAATAAATAGTTGCAAAATAAAAAGAAAAAGTGTATTCTGAAATAGGAACAATAAATTTTTGATTTAGAAAAAGATATTATAACAAGGAGAAAAGTATGCAGTATATTGTAGCTTTGGATATAGGGGTTGCCTCAGTCGGTTTTGCTGTTATTGATAAAAAGACCGAAACCGTAATAGAAGCCGGGTCAAATATTTTCCCCGAGGCATCTGCAACAGATAATCAGATGAGAAGGGGGATGCGTCAGGCAAGAAGATTAACAAGAAGAAAGAGAACACGGTTAGATGATTTCACGAAGCTGTGGGAGGAATATGAATTTGCAATTCCACAGGTTCAGGAAAATGATATTGTT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGTACCTAAACAAATTACGTGACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3230-2735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLZ010000016.1 Roseburia faecis strain BSD2780061689_150309_B4 NODE_16_length_80713_cov_21.1109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3229 36 91.7 30 A....A..............G............... GAATAATACTTCATCATTTTTAAATCATTT 3163 36 100.0 29 .................................... ACCGCGGTATTATCGGGAGAAAACCGTTT 3098 36 100.0 30 .................................... TAGAACAATTATGATGATTCCATGAACTGT 3032 36 100.0 29 .................................... GAAAAATATGGTATTTCCGGTAAGCGATA 2967 36 100.0 30 .................................... TACGACTCCTGCAATCTCTTTCCCCTCGCT 2901 36 100.0 30 .................................... ATTCCAGTTTCCGCAAAAAGTCCGCTCATA 2835 35 97.2 30 ..........-......................... TGTCTGTAATTCTGTACCAGAAATATCAAC 2770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTGTATCTTTTTGAATTAGCAAAGCTCTCAAAC # Left flank : ATTTTAGGCGTAATGATAAGTCATTGCGCCTGACATTATTGTCATTTGTTAACATGAGATCACCACCTTTGTATATCACGAAAATCACTGGTCCTATGTCAAGATTTAGTACAAGTTAAAATGAGAAATTTTTTCCCATTTTAACCTGCCAGAAGCTCAGCCTCAGTGTGTGTTCTTTCATATACTCGTTCGAATTCATTTGGTGACATATAGTTACAACGGCTATGAATTCGTTTCGTATTGTAGAAAGCTTCCAGATATTCGAAAATCAAACGGTATGCCTGCTTGTAATCGCGAATTTTAAAGCGGTTAAGCCATTCACGTTTGATAATTGAATGGAAGGATTCAATGCATGCATTATCCCACGGAAACGCTTTCTTTGAGTAACTACGCTGCATATTTTCTGTTGCTTTTTTATACTCCGTTGCAACATACTGACTGCCACGATCTGAGTGAATGATTAATGGCTGGTCGACGGGCTCTATGCAAACAGCACTGTT # Right flank : CTCAAATCACTTTGAGGTCATCTCCGAGCTTATTCTATATTGCGAATATAGTGCCAATTCTTATAATTCAATTATACATAAATCCTCATCAATTATCCAGCATTTTTCCCCTTCAATATGCGGTGTCTGTATTGCTTCTATAACAATAAGATATATTTTATTGTATATTGTGAATTCATAAAGCTGTATAATTTCCTCTGTTGAAAAATAGGCTTTTAAATTTGGAATAACAAATATATTAACTCCGCAAATTTGATTCATGAGATTTATATATTGCATCATTTTTTCAAGTAATGAGTCCGAGTCATCATCAATTTCTACTGATATAGATTTCATTAAACTAGATAAATCGGTATCAAAATTATATTTTAAATTATATGGAACAGTAGAAACAACCTTATCAAAGTATGATATCAGTTCCTGTTTAAACAAGACGCTCTCTTCTTGCAGTAACGTATCATTTTGAAATGTAAGTTCCTGATACAATTTTGTTATGATTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTATCTTTTTGAATTAGCAAAGCTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //