Array 1 164240-164916 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WCJA01000002.1 Streptococcus suis strain DP_SS28 2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	================================	==================================	==================
    164240	    32	 100.0	    34	................................	TGCTCAATAGCTCTTTTAATCAAAACTTGAACCA	
    164306	    32	 100.0	    34	................................	CAAATTCTTTTGAGATGATAGCCATCTCATAATC	
    164372	    32	 100.0	    33	................................	ATAATCGTTGCGATTTATTTTTTTAAGCGGGAG 	
    164437	    32	 100.0	    34	................................	TATGTTTTCGGCAGGTAAAGAAGTTATGTACATT	
    164503	    32	 100.0	    34	................................	ATTCCCGCAAAATATAAGATACCGTTTAAATCAC	
    164569	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA	
    164635	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC 	
    164700	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC	
    164766	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG           	Deletion [164821]
    164821	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG  	
    164885	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                 	
==========	======	======	======	================================	==================================	==================
        11	    32	  94.9	    33	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                  	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCATTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTGCAGATAACAGGCGTAACGACCTCTCATGCCACGGCTGAGCACGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 8.95
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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