Array 1 43782-44484 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYY01000011.1 Lactobacillus sp. UMNPBX12 NODE_11_length_64711_cov_32.076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43782 29 96.6 32 ............................C AAGAACGGATTAGCAGATTTACTTCAACAAGC 43843 29 100.0 32 ............................. ATTGCTGATGCGATTGGAAAAATGAGCCCTGG 43904 29 100.0 32 ............................. TAAGGTAAATGGATTTCTTGATGGCGAGAGTG 43965 29 96.6 33 ............................C AGAAAGATTTGTTTATCAAATTTATGATGAACA 44027 29 100.0 33 ............................. AAAATTTTAGTTAAGTTACGCATTGATCGTGGC 44089 29 100.0 32 ............................. GTCTTTGTCTACTTCACTGTCGAAGAATTGAG 44150 29 100.0 33 ............................. ATGGACATTTTTAAGATGATTATGGATCAAGCC 44212 29 96.6 33 ............................C CCGAATGTTTCAGCATTGCACGTCTAACAATTG 44274 29 100.0 32 ............................. ATTCTTGAATACGGTTGAAATGTAAGCACGCA 44335 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 44396 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 44457 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATTGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10895-11352 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYY01000019.1 Lactobacillus sp. UMNPBX12 NODE_19_length_38433_cov_26.3467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10895 29 100.0 32 ............................. TGTTCCTCATTGATTCGTTGAAGTCGTTTAAG 10956 29 100.0 32 ............................. CTTACACGAATTGGGACACGCATTAAATGATA 11017 29 96.6 32 ............................C ACCTTTTACGGTCTGCGGTGTCGGTATATCTT 11078 29 100.0 32 ............................. TTTGACCCGTCATTTGGGTGTACTTAGATAGG 11139 29 93.1 31 .............G....A.......... ATGCAGGATATACCTAATAATTTAAAGACTG 11199 29 100.0 32 ............................. GCTATCAATTGGAGTAGGTGAGACTGTTACAG 11260 29 96.6 32 ............C................ TTACGTGACTGACTAAAAAACTGAATCCAGGC 11321 29 86.2 0 ...........AC..........A..G.. | C,A,A [11343,11345,11349] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGGCTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATGTGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14079-14963 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYY01000019.1 Lactobacillus sp. UMNPBX12 NODE_19_length_38433_cov_26.3467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14079 29 96.6 32 ............................C GGCACTAAAATGCTCTCAGATGCGGATAATTC 14140 29 96.6 32 ............................C TTGCGTACCGGCATCGATACCCACACCGATAC 14201 29 100.0 32 ............................. AAGCTTTATAACAATCAAGTAAAAATGCCTAA 14262 29 100.0 32 ............................. CTTGAATTCTTACATCAGTCATTATTTAGTCT 14323 29 100.0 33 ............................. TTAGGATTTGATGATAGTTGGGCTAAAAAGGCG 14385 29 100.0 32 ............................. GGAAACTCCTAAGGAAACAATATCTTTGGTAA 14446 29 100.0 32 ............................. TGGCTTATGAGAAAACTGATGAATTGATCGCC 14507 29 100.0 32 ............................. GACAATCACGCCAACAGCAGGTTACAAAGTTA 14568 29 100.0 32 ............................. TTTTGGTGTAATTCTTCGCATTCTTGCCGTTT 14629 29 100.0 32 ............................. GATACGAGGATTATAGTCAGCAAACTTGATTT 14690 29 100.0 32 ............................. TAAATGGAGTAACCATGGAAGATCCTTTTGGA 14751 29 96.6 32 ............................C CGGTATGGACTCACGCGGTAAACTTTATGCTG 14812 29 100.0 32 ............................. ACGAGATGGAAGTACTTTGATGTCAAGACTAT 14873 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 14934 29 82.8 0 ...........AC....T......T.A.. | A [14955] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGTTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAATTTTTGTAAAATACTTTTATGCTAGATTTATATCGCAATAATCAAATGGAATGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACATTTCCATGGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 36204-37697 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYY01000019.1 Lactobacillus sp. UMNPBX12 NODE_19_length_38433_cov_26.3467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36204 29 100.0 32 ............................. TCTGGAACCGCAATAATTTGATCAAACCAAGG 36265 29 100.0 32 ............................. GAGTGAACACTGGAAAGCACCAGTTGAATTTG 36326 29 96.6 32 ............................C TTGATTTCTTCCCATGGTAGGGATGATTCAGA 36387 29 100.0 32 ............................. TCATATAATCCAGACTGGACAAATTATGTACA 36448 29 100.0 32 ............................. TATTACAAAAAAAGGAGAAATTATGAACAATC 36509 29 96.6 32 ............................C TGCCTGATCTGATAACACCTGGTTTATGGGCT 36570 29 100.0 33 ............................. AGATAGTGGTCAACTCAAAGAAGAAATTGGTCA 36632 29 96.6 32 ............................C AATGTGTTCCTTGTCCATCCAATCACCACCTT 36693 29 100.0 32 ............................. ATTTGTCTTACCCCAAATACCATATTGATATA 36754 29 96.6 32 ............................C TAAATTTGCGATACTGTTTTAATTCTAAAGTA 36815 29 96.6 32 ............................C TAATAAGATCGACACGGGTCTCTGGTCTTTAA 36876 29 96.6 32 ............................C TTGGTCTTATGTTCCTTACCAATATCCTTATC 36937 29 100.0 32 ............................. ATAGTTATTAACTTGAATTACATCATTTTGTG 36998 29 100.0 32 ............................. ATTATCCCTCAAGTTTTTGTAGCTGTTTGACA 37059 29 96.6 32 ............................C TGCTCCTTGGTGGGACGAGCTGCTGGCAGAAG 37120 29 100.0 33 ............................. TACAAGCTAGTGTTGCTTCTGGTGACGACTTCA 37182 29 100.0 32 ............................. GATTGCTGGTCCGTTTGCCTTGTCCTCCACTA 37243 29 96.6 32 ............................C AATGTAGTTTATGATACAATTAACACGGATAT 37304 29 96.6 32 ............................C GATTTGGAAAATGTACAACAAGATCCACAAGG 37365 29 100.0 31 ............................. GATGTGACTATACCTGGTAGCATCAAGAACA 37425 29 96.6 32 ............................C GCTTTGAGTTCTTTGTCTTTGGAGAAGAAAGG 37486 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 37547 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 37608 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 37669 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.7 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //