Array 1 48023-49760 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRN01000019.1 Escherichia coli strain 626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48023 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 48084 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 48145 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 48206 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 48267 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 48328 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 48389 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 48450 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 48511 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 48572 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 48633 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 48694 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 48755 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 48816 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 48877 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 48938 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 48999 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 49060 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 49122 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 49183 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 49244 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 49305 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 49366 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 49427 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 49488 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 49549 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 49610 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 49671 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 49732 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8987-9503 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRN01000029.1 Escherichia coli strain 626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8987 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9048 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9109 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9170 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9231 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 9292 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 9353 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 9414 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 9475 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGAATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //