Array 1 42024-44004 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCJ01000074.1 Vibrio cholerae strain EDC_715 725_Vc_EDC_715_contigs_EDC715_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42024 28 100.0 33 ............................ TACGAGGAGCGAGTGAAGTTATGTGTCGTAGAG 42085 28 100.0 33 ............................ TGAAGATACGCAGTGCGTCATCTTCACAGCTAT 42146 28 100.0 33 ............................ CAGATTCGACTGGTCTTGACCTAACGACAGCGA 42207 28 100.0 33 ............................ TCTGCGAGACAGCGGGTAAATCACAGCGTCGAT 42268 28 100.0 33 ............................ CTCGTTTAGCGGATTCTCTGCGGCGCTTATCTT 42329 28 100.0 33 ............................ TCAAACTTTAGCAGCTCGTTATACAGATTTTGC 42390 28 100.0 33 ............................ CTTGGTAGAGATTGAGCTAACCGAGTACGATCC 42451 28 100.0 33 ............................ TGATTAACAAACGCCTAGCAGTTGGCATGGTGC 42512 28 100.0 33 ............................ CAAAGACGTTGCGTTCCACTTCTCGACTGAGAA 42573 28 100.0 33 ............................ CAGATACCGGGAGCGTATATTCAGAACGACGCT 42634 28 100.0 33 ............................ CCAAACGTACTGGCTGAGACTGATTCTTTTGCT 42695 28 100.0 33 ............................ CGTAGTCCTGAGTGAGCAAAGCGGGTATCACAA 42756 28 100.0 33 ............................ TATGGTGGCTTATGTGTTCACCACCGATGCATG 42817 28 100.0 33 ............................ TCACTGTGACTCTGGTTTTGACTGGTAAAGATG 42878 28 100.0 33 ............................ TTTAGGGCGTCACCCTTTAAGCGCAGAAGCAGA 42939 28 100.0 33 ............................ TACTCGCAGCAAGCCTCGAAAAGCTCATCAGGA 43000 28 100.0 33 ............................ CCATTTCATCGTGCATGGCGTTGATTAGGTCTG 43061 28 100.0 33 ............................ CCATCTCCCCAAACTTACGCGCCACCTCAAAGT 43122 28 100.0 33 ............................ CGCATAGAAAAAGGGTTCTGTGTAAGTTTTTGG 43183 28 100.0 33 ............................ TTGCATCACTAGCGCCAGTGGTTAATGAGCCCA 43244 28 100.0 33 ............................ CGGGTTAGCTGAGTGCTGACCTGTCCGGTAAAG 43305 28 100.0 33 ............................ TTCAATCGCTCAGCAATCATGAAGGAAGCGTGG 43366 28 100.0 33 ............................ CGCCAGTTCTCATGCGGCCTCCTTCTGGTTTTC 43427 28 100.0 33 ............................ CGTGGGTGGCTTGACCTTCCGGTACATAATCGG 43488 28 100.0 33 ............................ CAGCTAAAGAGTCGAGTAGTGCCTCGTATTTTT 43549 28 100.0 33 ............................ CACAGTGCAGAAAGCCAGAAGTGATGTTGCTGG 43610 28 100.0 33 ............................ TATATACCTCTATTTAGGGGGATAATTACACAG 43671 28 100.0 33 ............................ TGTGCTAATTGCATCGGTTGACACTTGGGATGT 43732 28 100.0 33 ............................ CCTGCGACTCTCGAAAGCCGATCACCTCATCGC 43793 28 100.0 33 ............................ TCAAACGGAACGCCTAGTGTCGTCGCTAAACGC 43854 28 100.0 33 ............................ CACCATCATTCCAGTGCATGACCGTGTTTTAGT 43915 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [43932] 43977 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.1 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76096-73124 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCJ01000107.1 Vibrio cholerae strain EDC_715 725_Vc_EDC_715_contigs_EDC715_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76095 28 100.0 32 ............................ AATTTGGTTAATGCCTCCAAGCTCAAAGATAA 76035 28 100.0 32 ............................ AGAGCAAAGCTTTTCGCAATCTCCGAATTCAT 75975 28 100.0 32 ............................ TCAGTGAGAGAGCTATCAGCCCACTCTTTAAC 75915 28 100.0 32 ............................ TTGTTGATGATCTTGTTAACCTCTGCAATATC 75855 28 100.0 32 ............................ GCATTGGCATTTGTCCTCATAAACATCAAAGT 75795 28 100.0 32 ............................ TTGCATGGCTTTTCCGAATTTGTATCGGGGCA 75735 28 100.0 32 ............................ ATACAGAGCAAGCGCTTGGTGCGGTGCATAAG 75675 28 100.0 32 ............................ AATAAAAAAGCCCAATCAAGGGCTTTGTAAAA 75615 28 100.0 32 ............................ TCGACCGCCGTACATGATGTGATAACGCACAG 75555 28 100.0 32 ............................ ATAACGCGAGCCTGCTCCAACTTATCAATATC 75495 28 100.0 32 ............................ AACAAGCCTGGCTGGCAAATCAAGGCATGGAT 75435 28 100.0 33 ............................ ATTTGCTAATTCACAAAACTCTAACGCCGTCAT 75374 28 100.0 33 ............................ TTCATCTTTGGATCCTGCGTTGCTTTCTCTTCG 75313 28 100.0 32 ............................ ATGATAGGGAGCTAACAGCGCCAAGTGGTAAA 75253 28 100.0 32 ............................ GGCATGCCTCGCGGACAATATCGCGCAAGAGC 75193 28 100.0 33 ............................ AAGCAAAGTTAACCTGCTGGATTTTCTTATTGA 75132 28 100.0 32 ............................ ACACAAGCACGAGCCCATTTAGGCGGTATGAT 75072 28 100.0 32 ............................ AAAAGAAGTCGCAGCGCTCACCAGTTGCGCTC 75012 28 96.4 32 A........................... GTATAACCATGGCGGGTCTGCGTATATGACCT 74952 28 100.0 32 ............................ ACTCAAAGCAGAGCCTGAAAACAATCGAGCCT 74892 28 100.0 32 ............................ ACACTCGCTACCCACTTGGCGTGCGCAGTAAG 74832 28 100.0 32 ............................ TTCTTCTTCCTGCGCCTTTCTGTAGCGATCAC 74772 28 100.0 32 ............................ ATGCTCGAATATGCGTTATCATACCAAGCCCA 74712 28 100.0 32 ............................ TGCTGCATGTACATTCGGCACAACGGAAATGT 74652 28 100.0 32 ............................ ATATCCACCTCGAAACCGTTAAAGGTCATTCC 74592 28 100.0 32 ............................ TATCAAGAGTTTATCGATCGCGGTTACTTCAC 74532 28 100.0 32 ............................ TTTTCAAGAAACGATTCGGCATACTCTCCGAA 74472 28 100.0 33 ............................ AAGACGTCAAAGCTTGAAGACTTGCCGGAAGAT 74411 28 100.0 32 ............................ ACAGAAGGTGTAAGGGCAAATTATAACTCTGG 74351 28 100.0 32 ............................ TACAGCAAGATAGTTGCTATTATTCCTCTTAT 74291 28 100.0 32 ............................ AAAAGAGTTTGATGAGTTTGATGAAATCCCAG 74231 28 100.0 32 ............................ GACATGGTCATCATCCCGGCGAACGACGACAC 74171 28 100.0 32 ............................ GTCACAATCGACACGTCAGAACTGTTTGAAGT 74111 28 100.0 32 ............................ TGCAAGCAAAATCGCCGCTAACTCAGGAAGAA 74051 28 100.0 32 ............................ ATCACGGAACACGCTCAGCGTTTCTTTAAAGC 73991 28 100.0 32 ............................ ATCCAGCGCTTTACATCGGCAGGTGTATTGAA 73931 28 100.0 32 ............................ ATCTAAAAGGCCGATGATCATATCTTTGTTGA 73871 28 100.0 32 ............................ AAAACCATCGACTTCGATGGGGCGGGCATCGG 73811 28 100.0 32 ............................ TTTCTCATGCGCTTATGCACTTCTGGCAATCG 73751 28 100.0 32 ............................ CGCATACCAGAGAATGTCTTGAGGGGCGTTTT 73691 28 100.0 32 ............................ TTCAGAATCGAAGATCGCAATTTCTCGAATGG 73631 28 100.0 32 ............................ TAACTCGACAAAGCAGCTGGTCGTTAAGTCAT 73571 28 100.0 32 ............................ TTTGTTTGCTCTCCGTGTTCTTTGATGCGATT 73511 28 100.0 32 ............................ GCAAAGAGTGCGCATTGAAAATCAGTCAATTG 73451 28 100.0 32 ............................ TGTTTTATTTCCGCGCTAATCTGTCTCATAGT 73391 28 100.0 32 ............................ TCTACATTTTAACGGGGGTTGTTGGCCTTGTG 73331 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 73271 28 100.0 32 ............................ ATTACTACACTGCATCAAAAGAACGTGCATCG 73211 28 100.0 32 ............................ AATGTGATTAACTGCCGTTGCCGCAGATCGTT 73151 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //