Array 1 15293-12089 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 15292 29 100.0 32 ............................. GCCGAGCGGGAACGCTGGCCGAGGCCGATCGA 15231 29 100.0 32 ............................. CAGATCAAAGCCATCGTCGGCGCGCTGGACAC 15170 29 100.0 32 ............................. CCGTCTGGCGCGGATCTCCGCGCTGTGCGGGA 15109 29 100.0 32 ............................. TCGGTGTCGGACCGCGCCTTCGACCGGGTGGT 15048 29 100.0 32 ............................. GTGTCCCGGCGCATCGCCACCGGCAGCGAGCC 14987 29 100.0 31 ............................. GAGTTCGGGGAATGTGCGGTCGTCCGGGATC 14927 29 100.0 32 ............................. CAGGCGGCCGTCCGCATCGGCATGTACGTGCA 14866 29 100.0 32 ............................. CGTTCCGGCCGCCCGCCGCGGTACGCCGCGAT 14805 29 100.0 32 ............................. TTTGTCCGGTCGTCCGAGTCGATCGCGGCCAT 14744 29 100.0 32 ............................. GCGTCGGTTATGCCGTTGTCCTTGGCGATCTT 14683 29 100.0 32 ............................. CGTACGACGGATCCTCGGATGGAAGACCGATC 14622 29 96.6 32 ............................A TCTTCTCGGCCACCCCGGCCGAGAACATCGGC 14561 29 100.0 32 ............................. CTGTACGAGGCGACCTACGTTCCGCCCAGCCA 14500 29 100.0 32 ............................. TCGTCCACCGCCCGGAAGGCCGCCTCGGCCGC 14439 29 100.0 38 ............................. AGGCCGCCGGGTTCGGCGGCGACCTGCCGAAGGCCTTC 14372 29 100.0 32 ............................. CACGCCGGCAGCGTGCTCGGCAAGGACTGGCC 14311 29 100.0 32 ............................. CCGCAGGTCAGAGGGGGTGTGTGTCGGCTGGG 14250 29 96.6 32 ............................T GCGCTGTTCGAGAAACCCGCGGTGAAGATGCC 14189 29 100.0 32 ............................. TCGACGGCCAGGCGACGCGCGATGTAGTCAGT 14128 29 100.0 32 ............................. CGTACGGAGCCGGGCTGCTCCTGATCCGGGAG 14067 29 100.0 32 ............................. TTCACTTCCGCCCCAGAGGCGGACAAAAAGCC 14006 29 100.0 32 ............................. ATTCCGGAGGCGGGCAACCCGGAGTTGTGCCC 13945 29 100.0 32 ............................. GCGCACTGGCGCACCTACCGGCGCCGGTTCCG 13884 29 100.0 32 ............................. CTGGTCCGCGCGCACGACCCCCGCCCCCGCCG 13823 29 96.6 31 ............................A CTCCAGAGCGCGCTTGGCTGAGCGAAGTTTC 13763 29 100.0 31 ............................. CACACAGCGGCGGCACGGCTCGGCGTCAGCG 13703 29 100.0 32 ............................. AGCCCGACCAGCGACAGCCACGGCCCGCGAAA 13642 29 100.0 32 ............................. ATCAGCGGGATGCTGACCAGCCGTCCGCGCTG 13581 29 100.0 32 ............................. TCCTGCCAGCTGATGAGGAGCCACCCCCGGCC 13520 29 100.0 32 ............................. CGCACCGGCTGCGCCGGCTCGCCGAGCAGGCC 13459 29 100.0 32 ............................. GCGGGCCAATGTCCCGAGTTCAGCCATACACG 13398 29 100.0 32 ............................. CAGAAATTACAAGAGGCTGGGGGTGGGCGAAA 13337 29 100.0 32 ............................. CAGCTCGGTCGGCTGGTCGCCGACGGGGTGCT 13276 29 100.0 32 ............................. GTGAGCGACCAGGCCCGTGACCAGGGACTTGC 13215 29 100.0 32 ............................. AAGAAGCGGCGGAGACCTTCCGTCGGGCTATC 13154 29 100.0 32 ............................. TCGCGCAAGGACACCCGACAGGCTATCCGGCT 13093 29 100.0 32 ............................. GCGACCTACGGGCAGCGGCTGCGCGAGTTGTC 13032 29 100.0 32 ............................. GATCAGAACCGGAACACGATGACGATCTTTCC 12971 29 100.0 32 ............................. ACCGGCCATGGACCGACGCCGACCAAGCCGAC 12910 29 100.0 32 ............................. CCCCCCAGACGGCCCCCAGCGCCCCGCTGGGG 12849 29 100.0 32 ............................. GACGGCCCGGCGCAGGCGGGCCAAACGGTGAC 12788 29 100.0 32 ............................. GCCATCAACAAGGCAGGCGGCTGGAAACTCGC 12727 29 100.0 32 ............................. GACCCGGCCGAGCGAAACGCGGCTGCGATCGA 12666 29 100.0 32 ............................. GTCGCAACGGTCCGCGCCCGGGTCGAGGTGGA 12605 29 100.0 32 ............................. GCCCCGCCCAACCCCAGAGGGGAGGGCGGGGC 12544 29 100.0 32 ............................. GTCCACCTGGCCACGGGCCCGCTCAAGGCCCG 12483 29 100.0 32 ............................. GCGTTCACCAGTTTCGCCCGGTCGGTGCCGGC 12422 29 100.0 32 ............................. GCGCTGGCCGACACCATCGCGCTCGACCTCGG 12361 29 96.6 32 ............................T TTCCCGGAGCCTGATCATGCCGTCAGCGTCTA 12300 29 100.0 32 ............................. CCGCCCGGCACGTCGAGGCGATCCGGGACGTG 12239 29 100.0 32 ............................. GCACGTCGGAGACCGCCGACGCGGCCTCCGAC 12178 29 100.0 32 ............................. CTGGAACGCGTAATCCCGGGCCTCGTTCCTGA 12117 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ====================================== ================== 53 29 99.5 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : ACGCTCGGATAGCCGTTGAGCCGCGCGAATCCATCCTCGTCCTGCTTCTGAAACCCCGCCGTGCACTTACCGATGTCATGCAACCCGGCCCAGTAGGCCAACAGGCCACGCGCCCGCCCTTCGTCCACGCCAAGCTCGGCGGCCACAACCCGCCGCAAGCCGGGGGAGATGTAGCCGTCCCACAGCGCCTCTGCCGCGGCGGCCGTGTCGAGTAGGTGGCAGATCAGCGGGTACCTGCTGCCCCGTAACCCTCGGGATTTGCCCCACAGCTCAAGATCAACATCTGGACTGTCGGCCATACCACCTGCCTCAGCTCAAGCCCAGCTACAGGCGACATGTACGTCATGTGATGGCCAATCACTCTAGACCCTGATGGCGACAATTTCATAGTTTTGCCAGACGTGTACAACGTTCACGATTATGTCAACATTCGCCGACCCAAGACCTGCTGCCCTCTCGAAAACTCGACAGCGCTCCGATAACATCGCAGGTCGCGAAGG # Right flank : CTTAGGCACGCTGGGTGTTATCGCGCTCTCCGCCCTGGGACGCTCGGCAGACCGGGCTAAGGCTTCTTGGCCACGCCGACCGCGAGCCAGTTGGAGGGTGGGGTTTCGTCCTCGTCGGGGCGCCAGTGGCCGCCGTCGACGAGGCCGGGGTCGATCAGTTCGAGGTCGCCGAAGAAGGAGCGGATGCGGTCGCGGGTGCGTAACGTCATCGACTCGCGGACGGGTTCGAAGGCCTGCTCGAAGCGGCGGGCGGCGATGGGGGGTGGGCCGTCGCTGGTCAGGTGGGAGATGACGAGGTAGCCGCCGGGGGCCATGGCGTCCCGGAAGCAGGCGACGACGCCGTCGGGGTCGTCCTCGTCGGGGATGTGGTGGAGGATGGCGATGAGGAGGATCGCGACCGGCTCGGCGAGGTCGATCAGGGCGGTCAGGTCGGGGTGGGCGAGGATCTCCTTGGGGCCGCGGGCGTCCGCGCGGATCGCCACGGTGTTCGGGACGCCGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24287-26673 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 24287 29 100.0 32 ............................. ACGGTGACGTCGAGGAAACGGCCAGCGTTTTC 24348 29 100.0 32 ............................. CCGGCCCATTCGATCTGTCCATCCCGGTCGAT 24409 29 100.0 32 ............................. CACTATGTTCCAGCATCACGGCTCTGACTGAC 24470 29 100.0 32 ............................. CCCAAGAAGGCCCAGCAGTACTCCCCTGAGGA 24531 29 100.0 32 ............................. GCCCGCGCGGCGCGGGCCGCGAGCAAGGGAGG 24592 29 100.0 32 ............................. TAGATGCGGACACGGTGGTCGGTGCCGCGGCA 24653 29 100.0 32 ............................. GCCGTGGGCCTGGCCGCCTCGTCGAGGCCTGC 24714 29 96.6 32 ............................T GCACTCTGGACCGCGCCGATCACTTGATTCGT 24775 29 100.0 32 ............................. GTAGCCAATCGCATCGGCGGAGAGACTACGTA 24836 29 100.0 32 ............................. GGTGACGCACCCACCCCCGAGAGCGTCACCCC 24897 29 100.0 32 ............................. CGCGTCATCGAGCTCGTGATCAAGGGTGACGC 24958 29 100.0 32 ............................. CCGTCCTCTTGTCGGCACCGGTGACCTGGCCG 25019 29 100.0 32 ............................. GTGGCGGCACCCTTAGGCGGGTAGAGGTTGAT 25080 29 100.0 32 ............................. TATGAGGGCGACCACAGATGGTTCCGGTGTGT 25141 29 100.0 32 ............................. CCGCGCACAACGCCGGCGCTCAACGTCCGGTA 25202 29 96.6 32 ............................T CGACCACATCCGCTACCTACAGCAGGTCGGCC 25263 29 100.0 32 ............................. GTGTTGTGCAGCACCTGGATCAGCGGCACACC 25324 29 100.0 32 ............................. GACCCGCTGGTCGCGACGCTGGCGGCGACGGA 25385 29 100.0 32 ............................. CGTCCGGTGCCCTTGCAGTTGCCGCACTTGAC 25446 29 100.0 32 ............................. CGGACGGCGTCCATCGTGCGATCCTTTCTGTA 25507 29 100.0 32 ............................. AGGACCTACCACTGCCCGAACCCCGACTGCCG 25568 29 96.6 32 ............................T TCAACGGGCAGCGCGTCAACACGCGCGTCATC 25629 29 100.0 32 ............................. CGTACGGAGCCGGGCTGCTCCTGATCCGGGAG 25690 29 100.0 32 ............................. ATGGAGCGGCGCAACACCGGCCCGGCACGGCT 25751 29 100.0 32 ............................. GCCGGCCTGCGCCCCACCGACGTCGTCGCCCA 25812 29 100.0 32 ............................. GCCCGGGACATCGGCCCCGGGCCTTCGTGCTG 25873 29 100.0 32 ............................. GTGGCTCATCGGAGAGACCTTTCTTGGTCAGG 25934 29 100.0 32 ............................. CCGCCCTCACCCGCCCAAACCCGAGAGAGAGG 25995 29 100.0 32 ............................. ACCAGGTGGGTGGCGTCGCCCACTCGGCTGAT 26056 29 100.0 32 ............................. CCTTCGCATGAGCTGAGCCAGCTCATCGTGAC 26117 29 100.0 32 ............................. TCGGTCAGACCGAGCAGCTCGCGGACGCGGGG 26178 29 100.0 32 ............................. CACATCGACGCCGTCGCGCAGGCCGCCCGGGA 26239 29 100.0 32 ............................. ACGCGCCCGAGCGCGGCCTGGAGGCCGCTACG 26300 29 100.0 27 ............................. TCGATTCCGCAGACCAGCGGTTTGCTG 26356 29 82.8 88 .GG.....A.TA................. GTGACGGTCACGGTCCCGTCCACTGCACTGATGTCCTCCCCAGGTGCGTGGGGGGCAATCAGCGGGTGTCCACTGCTCCGGCCGGGGC 26473 29 79.3 141 A.........T..GT..T........T.. CGGCGGCGTATGTGCTGGCAGGCCGTCCTGCCTCCCCACGTAAGTGGGTGGGCTGCGTTCTCAGTAGCCCTCGATAACGTGATTTCGTCATCAAGAACGTGGGCGGGCCGTCGTAGGGACGGACGGGACTAGGGTGCCGTC C [26477] 26644 29 82.8 0 ...GC..T.C..................A | C [26662] ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 37 29 98.2 36 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CCGAGAGTACTCCCGCAACGGCGGGCGACCGCAGCGTCGATGTGGTCCACCTCTGGGATCCGCATCTCGGCCCGCTTCCCGCCGGTGTGAACTATGGCGTTGATTCCTTTGACGCATACGACTCGTTCGACCTGCAGGTGGAGTGAGCGATGGCATCGATGGTCGTGATCTCCACTACGGCGGTCCCAGATCACGTAAACGGAGCGTTATCACGCTGGCTAATCGAGCCGTGTCCCGGGCTTTTCGTGGGCACGGTATCCGCCCGTGTGCGCGACGAACTCTGGTCGGCGGTCAGTGCGAGCGTGGGCGACGGCATGGCCGTCCTCATCCACCCGGCCGACAACGAGCAGGGTTTCGCGCTACGCACGTCGGGTCAACGTCGTCGACACGTAGTCGACTTCGACGGCCTCCAGTTGATCAAGTTCGCCGCCGAGACAACTGACACCTCATCTGATCAAGAAAAACCTCAAGTGAAAATGTGAAACCGCAGTTCAGGAAGT # Right flank : ATACGACGTTGTCGAGGTTCGGATTCGAGGCCTCGTTTTTCTCATTCCATGCGTGAGTTTTCGCCGGCGCCCGGCCCGGCTGACGTCGTCTTGCTCCGCGAGCTGCGCCGGCCGTGCCTGGGGATCGGGCCGCCGCCCGGCGCCCCGCGACGGCGCCGGGCGGCGGTGGGCGTCAGGGGCGCTTGGCCCGGTCGATGACCTCCTCGGCGGTGAGGGGGGACGGGGGGTGGTAGGTGAGGCACAGCGGGGTGCGGATCTTGACCATGGGGCGGCCCTCGGTCGCGACGTAGAACTCGCCGCCCTTGAGGCGGGCGATGTCGGAGACGGTGCCGCCTTTGGCGCGGGCCATCTCCTGGGCGGCGGTGATCTGCACCGGGGCGTTCAGCCGGCCGTAGAACTGGGTCGTGGCGTTGCCGGGGATCTGGTTGTGCAGGCCCTTCGGGGCCTGGGTGGCGAACACCAGGCCGAGGCCGTACTTGCGGGCCTGGGAGGCGAGGGCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2879497-2880927 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2879497 29 100.0 32 ............................. GCGCCCGGCTCGCCGGCGAAGGAGAACAGGGC 2879558 29 96.6 31 ............................G TCGTGGAGCTGGCCTGGGACTGGGTGCTCTT 2879618 29 100.0 33 ............................. CCGCTTGCGATCTTTTGGGGGTACCCCCCACAA 2879680 29 100.0 32 ............................. TGCTCCCGCTCGGTTCGGGCGGTCTCCATCAG 2879741 29 100.0 32 ............................. TGGTAGGTCTCCTCGCCTTCGGCGCCGGGCGT 2879802 29 100.0 32 ............................. GGCCTCCAGGGCGCGGGCTGATCCCGTCTCGT 2879863 29 96.6 32 ............................G ACCGAGAAAGGCGAGGACGCCCCGGTCAAAGC 2879924 29 96.6 32 ............................G CAGCAGGTCACCGTGCTGCATGTCCACGGCGA 2879985 29 96.6 32 ............................G TCCGCGGTCCCCTTGAATTCGGCGATCTTGAA 2880046 29 100.0 32 ............................. TGGCCGCGTTTTTTGAACCAGTCGACGCCGTT 2880107 29 100.0 32 ............................. AGGAGTAACTGAGCATGGCCGTGAAGAAGATC 2880168 29 100.0 32 ............................. GGCTCACCGTCGAGCTGGTTCTCTTGCAGGCC 2880229 29 100.0 32 ............................. GTGGTGGAGATCCACCAGGAGGCCGTCGAGCT 2880290 29 100.0 32 ............................. CGGCGGCTGAAGGCGTCGAACCGGGCGCTCGT 2880351 29 100.0 32 ............................. TCGCGGCAGGCCTCCTCTTGGACCTCCAGGCC 2880412 29 100.0 32 ............................. TTCACCGACCAGTACCTGCTCGCCCGCCCCGA 2880473 29 100.0 32 ............................. GGGATCTCCGGAAACTGGCAGGCCGGGTTCGG 2880534 29 100.0 32 ............................. GACATCGACGGGTGGGAGCGGGAGATTCGCCG 2880595 29 100.0 32 ............................. ATCAGCGCCGCAGCGCTGGTGCGCTCCATCGG 2880656 29 100.0 32 ............................. CTTCCTGCATATATGGAAGGTGTCCGGTACTA 2880717 29 100.0 32 ............................. CGGCATCTCCGGCTCCGCGGCCGCGAGTTTGT 2880778 29 96.6 31 ..................A.......... TTGTAAGGGATGTTCACACGCTTGTAGTGTC 2880838 29 96.6 32 ........T.................... GCCTACGCGCTGGCGCTCCGCGCGTTCGAGGC 2880899 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TCATCACCCACCGGCTCCCGCTCGACCGCGTGCTCGACGGCATCGGCATCGTCACCCGCGGCGAGGCCATCAAGGTCACCGTGGAACCGTGACCCCACCCAGGAGGAAGGAAGACGGCCATGCCCGAGAGAAAAGTGACGATCGCCGCGAAGACCGGCCTGCACGCCCGCCCCGCCAAGCTCTTCGTCCAGGCCGCGGCGAAGACGGGCGTACCCGTCCGCATCCGCGTCGGCGACGGCAAGCCGGTCCCCGCCAACAGCATGCTCGGCGTCCTGTCCCTCGGCGCCACCCACGGCACCGAGGTCACCCTCGAGGCCGACGGCCCCGGCGCCGACGACGCTCTCGACACCCTCGCCGCCCTGCTCGGCAGGGACCTCGACGCCGAGCCCACCGGTGCCTAGGGCTAACAGCCTGGATCGACGAGGTTCGGCGATATGTCCGTTTCCAAAGAAGTGCTCGGAAACAGCCTGTCCCCCGGATAAACTCGCAGGTCAGTAAGT # Right flank : CCCCTGTCGCCAATATCGAGCGACCGCGCACACGGGATAATTCGCATGACCCCTGATCGGAAAAATGCTCACTCCGGGCACAGGTCGTGTTTCATAAAACCGACTGCCACCCGTTGATCACGGTGATGACTTAGGACAACCTCGTGCGGCATGCTAGTCATAACGCGTGACCATTCCCTGGTTGCGTTTGAGCTGACGCCCACTCCACGGCATGCCGCAGCCCGTAGGACAGCGGGTCGCAGGCGGGAGTCCGTCCTCCCTGGGCCCTCTTGGCCTTCCGGTGGGCGCCCTAGTTCGCCTTGCTGGGAGTGCACGCCCTTGAGACTGCACCTGCGCAGGCACGCGCGATTGGTCGTGTTGGGGTAGACCCGGCCACCATCACCAGATCCGGGCCTGTCCGGAAACGGCCCCACCCAGGTGTGTCGCTTTGATGCCGCCAGGACCCTGGCGGTTATGGACTGTCACTCGCGCCCGCCGACCATCACCATCGCCAGCACTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2882688-2881498 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2882687 30 93.3 31 .........T...................G CGGCGCGCATCCGCTCGTACCGGCGCGCGTA 2882626 30 93.3 31 .........T...................G GGCGGGTCGTGCCGGGCGCGGTCTCGAGCAG 2882565 30 93.3 31 .........T...................T GGATCTGCCGCGAGGGCGAGCGGACCGAGCC 2882504 30 96.7 31 .........T.................... AAAGCCCGGACCGCGTTCACGTGGCGACTCA 2882443 30 96.7 31 .........T.................... AGGAGCCCTTAACCCGGGCGGCCGCGGCCCG 2882382 30 96.7 31 .........T.................... TCGGGCTCCATGAGCAGGATGCCCTCGCTCA 2882321 30 96.7 31 .............................T TGCCCAGCCCCATGCGGGAGCTCATGCGGGA 2882260 30 96.7 31 .............................T TGCCCAGCCCCATGCGGGAGCTCATGCGGGA 2882199 30 100.0 31 .............................. TGCGAGGGGCTGGAGATCTTGAGCGCGTCCT 2882138 30 100.0 31 .............................. GGGCAAAACGGACACGGCTTCGCGCCACGCT 2882077 30 93.3 32 .........T...................T CTCCACCGGACACCCCCCCTTTTTTAGTGCGT 2882015 30 96.7 31 .............................G GGTCGGGATGGTGCGGGTGCTCATGACTCAC 2881954 30 96.7 31 .............................G AGGCGCACCACCAGCACCTCATCGACCGGAA 2881893 30 96.7 31 .............................G TCAAGGACCTGAAGGTCTACGACCAGTGGGC 2881832 30 96.7 31 .............................A TCCAGCGCGCCGCGATCCAGGGCCAGACCGA 2881771 30 96.7 31 .....T........................ GGCCGCCGCCGGCCGACTTCTTCAGCTCGAT 2881710 30 100.0 31 .............................. GCGGGTTCAGCAGCGATCACGTGGCCGTCGG 2881649 30 100.0 31 .............................. AGGTCATCAAACCGGCGTGGGATGGGATTTC 2881588 30 100.0 31 .............................. TGCGAGCCGAGGGACAGAGCGAAGAAAATCA 2881527 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================ ================== 20 30 96.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCTGTGCCGGAAGCCACCCGTCCCACAGCAGCCCGGCTACGGCACCGCTATCCGCCATGTGCCGCCACAGTGGCAGCCAGCCCTCACTATCACGATCATGTTTGGCCCAGACCGCCCGCGCCGCCCTCGATAAGCCGTTGGACAGCCCTTGCCCTGATCCGCCCTCCACGCCACGAAACCCAATATGATTGGCCGCAACCGAACATCTAAAGTCACCAAACTTTTATGAAATTGAGATCATGGATCGCTCTCGCGATAAACGAGTGCAGGCTTCACATTTTCCAATAATCGGACTTATGGGTTGTTCTCTGTCTTTCTGGGTCGCCAAGCTTGCCTCGCTACGATGTCGGCATCAAGCCGACCTCTTCACGCTTACTCCTCAACCGGCCTCGGGTTGGACGGCGAGTTGACCTGCCACGAAGACGATGTCCGGTATGTCCAAATCTCGACAACTGCTCGAGAACTGCCGCCGCCACGAATAAACGTGCAGGTCAGCGAGT # Right flank : CGTCCTGCTGCAGCGCGATGCATCCAGCTAGTCCATGCCGAGACCGCTGCCTGCAAGAAGAGCCGCCACCGGTAGTGCTGGCGATGGTGATGGTCGGCGGGCGCGAGTGACAGTCCATAACCGCCAGGGTCCTGGCGGCATCAAAGCGACACACCTGGGTGGGGCCGTTTCCGGACAGGCCCGGATCTGGTGATGGTGGCCGGGTCTACCCCAACACGACCAATCGCGCGTGCCTGCGCAGGTGCAGTCTCAAGGGCGTGCACTCCCAGCAAGGCGAACTAGGGCGCCCACCGGAAGGCCAAGAGGGCCCAGGGAGGACGGACTCCCGCCTGCGACCCGCTGTCCTACGGGCTGCGGCATGCCGTGGAGTGGGCGTCAGCTCAAACGCAACCAGGGAATGGTCACGCGTTATGACTAGCATGCCGCACGAGGTTGTCCTAAGTCATCACCGTGATCAACGGGTGGCAGTCGGTTTTATGAAACACGACCTGTGCCCGGAG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : GTGCTCCCCTCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2892239-2893854 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2892239 29 100.0 32 ............................. TCCCCGCCGGCGGCGAACTCGGTGACCGCGCG 2892300 29 100.0 32 ............................. TGGTCGATCTGCACGCCGTACCACTCGAAACT 2892361 29 96.6 32 ............................G GCCGCCAAGGACGTCGTCAATAATGCGATCCG 2892422 29 100.0 32 ............................. GCCACTGCTGGAGCGAGCCGTACGACGAGCAG 2892483 29 100.0 32 ............................. ATCTGGCGCGCCCTCTTCGACGCCGCCAAAAA 2892544 29 96.6 32 ............................G ACCACCCTCGTCGGCAACCTGGTGCGGTCCTT 2892605 29 96.6 32 ............................G AATACGTCGGTGCCGCGGTAATCGCGAAAGCC 2892666 29 100.0 33 ............................. GCATCACCCCACTTGGCGCGGCACACGCACGGC 2892728 29 100.0 32 ............................. ATCAGCGCAGGTAGTAGCCATCAGCGCAGGTA 2892789 29 100.0 32 ............................. TACTGGATGCGCAGGCTCGCGGGCGCGGTGTG 2892850 29 100.0 32 ............................. TCCGGGGTGCTGCTCCCCGAGCATGGGCGGGG 2892911 29 100.0 32 ............................. CACTCGACCGGCCGGGTGAACGGCGGCCCGGC 2892972 29 100.0 32 ............................. AGCCCTTGGACCTGGCCGACGAGCCAGTTCCA 2893033 29 100.0 32 ............................. GAGGGCGACCACGGCGGCGTGCAGGGCGGGCT 2893094 29 100.0 32 ............................. CTCAAGTTCGGTTTTCAACGAACCGAAACGGG 2893155 29 100.0 32 ............................. TGGCAAGGCGGCCCCGACCCAGCCGACCAAAG 2893216 29 100.0 32 ............................. GCCCTCTACCGCCTCGCCGTGCAGCAAGAGCC 2893277 29 100.0 32 ............................. TGGGCCGCGGCCGGGACGAGGGTGAGGTCGAG 2893338 29 100.0 32 ............................. GCCTTCGGGCCACCTACAGGAAGCGCGCCGGA 2893399 29 100.0 32 ............................. CGCTGGCGGTGGCTCGCCGACAAGGCCACCCG 2893460 29 100.0 32 ............................. GACTAGGCCCGGGATGGTGCGTAGGCCGCCCC 2893521 29 100.0 32 ............................. CCATCGGCGAACGTCGCCGCCAACCTCTGCGC 2893582 29 100.0 32 ............................. GCCACGGCGGGGTCATACCCCACGCGGACGTC 2893643 29 100.0 32 ............................. GACATCGCGCTCGACCTGGGTGACACCACTCC 2893704 29 100.0 32 ............................. GTCGATCTGCTCTCCCGGATCCAGCGCACGGA 2893765 29 100.0 32 ............................. CAGAACCTCGGCCTGGACAACTTCGGTGGCGA 2893826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GGTGGAATGGTGACGATCGTCGTCCTTACCAACTGCCCCGTCGGTCTCCGCGGCTTCCTGACGCGATGGCTCATGGAGATTTCACCAGGTGTCTTTATCGGCAACCCGTCAGCGCGCGTCCGAGAGGCCGTGTGGACCGAGGTGCAGGCCTACGCGAACACAGGCCGGGCCCTCCTCGCCTACACCACCGATAACGAACAGGGCTTCACCTTTGAGACTCATGACCACAAATGGCATCCAGTGGATCACGAGGGCCTCACCCTGATCCGTCGCCCCAAGGAAGGAGCCGGCGTTGCCGCTGTTCCACCTCCGTCCGGATGGAGCAAGGCGGCAAAACGCCGCCGTTATGGCAGACGTTAAGCAGTTCGCCTCTTACCCCACCGATGGCCGCACTACCTCCGGCGACTGGCACCCAGGCCGATGAGGTCGGCGATATGTCCGTTTCTGCAAAAGTGCTCGGAAACCGCCTCGTCTCCGCCTAAACTCGCAGGTCAGGAAGT # Right flank : CATGGAGGGCCACGTCCGCTGAGGTGGTGTAAAAGCAGCCACCGCGTGATCCGTTTCCCGCAGGTTAAGCGGTAAGCGACTCAGGAAGCCGCTCTTGGTCCGGTGTGCCGCCGGCAATCACCTGAAGCCGGATCTTGGCCAAGATGTCCAAGCCCATGGAGCGGCGGGATTCGGTCCACTCGCCGGTCTGCTCGGCCAAAACCGCGCCGACCAGCCGGATGATCGCAGCCCGGTCCGGGAAGATCCCCACCACATCCGTGCGGCGGCGGATCTCTTTGTTCAGCCGTTCCCGGGGATTGTCCGACCAGATCTGCCTCCAGATCTCCCGGGGGAAGGCGGCGAAGGCCAGAAGGTCGTCACGGCCCGCATCCAGGTGGTCGGCGGCGGCAGGATACTTGGCTGCAAGGGCGTCGACGACCCAGGCGTGCTGGGTGCGCATCTGCCCGGCCGATGGCTGGTCGAAGATCGTGCGGACCAGCGTGGCGACCCAGGGCTGGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2897796-2895267 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPQ01000001.1 Thermopolyspora flexuosa strain DSM 43186 Ga0197564_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2897795 29 96.6 32 ............................G GCCAAGCGGATCGCCCGCCACATCGCCAAGGC 2897734 29 100.0 32 ............................. GAACGCAAGTACAGCGACCCACCAGGCATGCC 2897673 29 96.6 32 ............................T GTTGGAGTCACAAGCGAAACGTGAGGTAGACA 2897612 29 100.0 32 ............................. GCGAGGTCGAGCCTGGTCATGGGCTCGACCCC 2897551 29 96.6 32 ............................G CGGCAGATGTACGGCGAGATCGGCCTCAAGTA 2897490 29 96.6 32 ............................G GAGCAGGACGCCCTGATCCGGGCGCTGGTGCG 2897429 29 100.0 32 ............................. CGGCTGTCCAACCTCGTGCTGTGCTGCGGGAC 2897368 29 100.0 32 ............................. ATGGGGAGCACGACCAACTTCGGTGCCGGGCA 2897307 29 96.6 32 ............................G CACGGTGAAGGCGTCCCGGGTGGCCTGGTCGG 2897246 29 100.0 32 ............................. TGGTTTGGGGTGCGGGTGTGATGGATTGGGTT 2897185 29 100.0 32 ............................. AGTGCGGCCCCCGGGCGGCGATCGAGGCGCCA 2897124 29 100.0 32 ............................. GCGGACTGCGGGATCCGGCGGCACCGGTCGCC 2897063 29 100.0 32 ............................. CCGCCGATCAGCACTTCGGCGGCCGTCGCCTC 2897002 29 100.0 32 ............................. ACGGACAGGTCGGCCTCGACGGCGCAGGAGCC 2896941 29 100.0 32 ............................. CGCGCCGCCTCAGGGACGCCGATGCTCGAACC 2896880 29 100.0 32 ............................. ACGGACAGGTCGGCCTCGACGGCGCAGGAGCC 2896819 29 100.0 32 ............................. CGCGCCGCCTCAGGGACGCCGATGCTCGAACC 2896758 29 100.0 32 ............................. GGCTGGAGCGCGCCGTGGCCGCCCGCCGGGCC 2896697 29 100.0 32 ............................. GGCTGGAGCGCGCCGTGGCCGCCCGCCGGGCC 2896636 29 100.0 32 ............................. GCCGACTACGACCCGATGAAGCCTCGCCTGCG 2896575 29 96.6 32 ......T...................... ACCATCATGACGACTGAGGCGTGCCACCGCGA 2896514 29 100.0 32 ............................. GAGGCGCAGGTGTGCCGCATATCGTGGATCGT 2896453 29 100.0 32 ............................. AGCGCATTCGTGGGCGGGCGGGTCATGGTCTC 2896392 29 100.0 32 ............................. CCGCGACCCCTCCGCCGCCGACGTCCCCGGCG 2896331 29 100.0 32 ............................. TCCTCGTCGTTCAGCAGGGCCACGACGGCGCC 2896270 29 100.0 32 ............................. GCCTCCAGATCGCCGCTGATCGCCGCAGCGAA 2896209 29 100.0 32 ............................. TGTTCTTGCTAGTCAAGCTCAGCAAAGCCTCT 2896148 29 100.0 32 ............................. GACGCACGCGCCGAAGGCCGCCTCCGCGGATT 2896087 29 100.0 32 ............................. CCGCTCGAACCGACCAGCGCGAGCACGGCGTA 2896026 29 96.6 31 ............................G GCCTCCAGGGTCGCCGCGTACTCCTCGTCGG 2895966 29 100.0 32 ............................. CCGGGGGACGTCGAGGCGCAGCCCAGGTGGGA 2895905 29 100.0 32 ............................. CGCTCGTCAAGCAGCAGCTCGCTACGGACCTT 2895844 29 100.0 32 ............................. TCGGAGCGTCCGCAGACGATCGTCGCCTCGGT 2895783 29 100.0 32 ............................. ACCGTCCGCAAACTCCAAGCCGCCGCCCAGGT 2895722 29 100.0 32 ............................. GACCATCCCTCCTTGCTCGCGGTCTCCCCGAA 2895661 29 100.0 32 ............................. GCGGCACCGACAGCCCTTCCGTACAGGTCGCC 2895600 29 100.0 32 ............................. CCCTGGAGGGCGGTGGTGATCTATTGGGGCGG 2895539 29 100.0 32 ............................. GGTTTGCCTACGGCGATTTCATACAGTGTCAC 2895478 29 100.0 32 ............................. ACGGTGCTGCGGGCCGGGCCGTTCGGCACGAT 2895417 29 96.6 32 .......T..................... AAGCACGACACCGTCTACGCCGAGCTGAACGG 2895356 29 100.0 32 ............................. TCGCCCGCGCCATGCGCCTGTTCGAACGGCCC 2895295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AACGCGGTGGTGCACACCCGCTCCGGCCGTGTCGAGGTGACCGTGCTGCCAGACGAAGACGGGACGGTGACGATCCAAGTCGCGGACCAAGGCTCGGAAACGTTCCCCTTCGCCTGCGGATGCGTACGCGACACGCTCGCCGAGTCCGGACGGGGAATCGACCTGATCCGCTCACAGGCACAACGCTGGGGCTTCACCGAAGAGCCGACGGGCGGCCTCCTCTGGTTTGAACTGGCATCGAACGAGGACGGGGCCACCCCCTCGCCAACGGTCGAGATTGCATGAGACCAGGCCCGAGACCCGAGCTACCGGGCGCACCCGTTCCCCTGGGCGCGCCCGGATCGGCCGGTTCGTGTCCGGATCCCGTGATCGGCCGTCCTGCAACGGGCGCGTTCTTCATACCTACTCCGAGGCGAAGTGAGGCCATGGGTGATATGTCCGTATCTGAAGAAGTGCTCAGAAACGGCTTGTCCGTCGGATAAACTCGCAGGTCAGGAAGT # Right flank : CAGCTGCGTCCACGGAAGTGGTGTAAGAGTTTGACCAGGTGACAGGAACGCCGCCGGACACACGAAGCGGCCATCGCGTAGATCCTTCGTGATTCCCGGTCAAGATCGAAGGAGGACAAGCGATGGCCGCCGGCAACAGCCTGGACCCCGCCGCCTGGCTTGCAGAGCAGATCCAGGCCCAGGATCCCGATCTGTCGCGAACCATGGTGAAGACCATGGCCGAGGCGTTGATGCCAGCCGAGGCGGACAGCCTCTGCAACGCCGCCTACGGCGAGCGCAGCGCCCAGCGGGCCAACCACCGCAACGGCTACCGCAAACGCGAATGGGACACCCCGCGCCGGCACCATCGAGCTCGCCATCCCCAAGCTGCGAAGGGGGCCGTATTTCCCCGAATGGCTGCTACAGCGCCGCCGTGCCGAGCAGGCCCTCATCAGCGTCATCGCCACCAGCTACCTTCTGGGGGCGTCCACCAGACGCATGGACAAGCTCGTCGAGCAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //