Array 1 958853-960162 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075116.1 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 958853 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 958914 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 958975 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 959036 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 959097 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 959158 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 959219 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 959280 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 959341 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 959402 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 959463 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 959524 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 959585 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 959647 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 959708 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 959769 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 959830 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 959891 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 959952 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 960013 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 960074 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 960135 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 976419-978260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075116.1 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 976419 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 976480 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 976542 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 976603 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 976664 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 976725 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 976786 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 976847 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 976908 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 976969 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 977030 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 977091 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 977152 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 977213 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 977274 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 977335 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 977396 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 977457 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 977518 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 977579 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 977640 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 977743 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 977804 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 977865 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 977926 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 977987 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 978048 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 978109 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 978170 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 978231 29 96.6 0 A............................ | A [978257] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGCTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTACGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //