Array 1 162861-160774 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMN01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162860 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162799 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162738 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162677 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162616 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162555 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162494 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162432 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162371 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162310 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162249 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162188 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162127 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162066 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162005 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161944 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161883 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161822 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161761 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161700 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161639 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161578 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161517 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161455 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161352 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161291 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161230 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161169 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161108 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161047 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160986 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160925 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160864 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160803 29 96.6 0 A............................ | A [160776] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180485-178992 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMN01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10169 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180484 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180423 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180362 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180301 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180240 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180179 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180118 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180057 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179996 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179935 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179874 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179813 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179752 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179691 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179630 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179569 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179507 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179446 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179385 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179324 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179263 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179202 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179141 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179080 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179019 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //