Array 1 509831-510789 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WNIQ01000001.1 Streptococcus agalactiae strain M134 NODE_1_length_709954_cov_148.659891, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    509831	    36	 100.0	    29	....................................	CCGATTATAAAGAAAGTTTCTGACACAAT 	
    509896	    36	 100.0	    30	....................................	AACGCATTCAATCGGAAATCAAAAATCGGA	
    509962	    36	 100.0	    30	....................................	AAGGCGATGTAGCTTAGAAAGGAGAAGGGA	
    510028	    36	 100.0	    30	....................................	CGATAGATTAAATGCTTGGGCTATATCAAC	
    510094	    36	 100.0	    30	....................................	GGTACGTACCCAACGATATACCATGCAGTA	
    510160	    36	 100.0	    30	....................................	AATTGGCGAGCACGTTCAATCTGTGCACGT	
    510226	    36	 100.0	    30	....................................	AAATTTAATTTAATAATGGGAGAATTACTA	
    510292	    36	 100.0	    30	....................................	TAATGGTTAAGCCGCGATTTGGAATTTCTA	
    510358	    36	 100.0	    30	....................................	AACATTTTTTTATGATGGGGGTAACCTTAA	
    510424	    36	 100.0	    30	....................................	GCTATAGCAAGAGACAACAATGAGTGCCAA	
    510490	    36	 100.0	    30	....................................	TTCTGTCATCTCGTTTTTACTAACCATCTT	
    510556	    36	 100.0	    30	....................................	GCCACCTCTGGAACTCCTTAAGTTTACGCA	
    510622	    36	 100.0	    30	....................................	CAACTGAAAGCAAAAAAGATTATATGCTGA	
    510688	    36	 100.0	    30	....................................	ATTAAACTCTTCAATCGTGTGTTCACAAGA	
    510754	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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