Array 1 80631-80175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038446.1 Aeromonas media strain R25-3 plasmid pAeme3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80630 29 100.0 32 ............................. GGCACGCGCCGCGCCCTGACCCACCTGCGGGC 80569 29 100.0 32 ............................. CCCGCCGACGAGGAGATCGCGACATTCCTCCA 80508 29 100.0 32 ............................. ACGGCACCGGCATCGATGCGCGACTCGGCGGT 80447 29 96.6 32 ...........T................. CCATCGGACTCGACCGCATCGGAGGCGCCCAC 80386 29 100.0 32 ............................. CCCAAGACGATCGCGCCCACGCCCACGACGGC 80325 29 96.6 32 ..A.......................... TACCAGCTCAAGATCAGAGGGCTTTCCTTGGC 80264 29 93.1 32 .C......T.................... TTCAACCCGGCATGTGAACGCCATAAGCTGAC 80203 29 82.8 0 ...C.............A......T..TT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTCTCTCCCGCACGCGGGAGGGTTAACGG # Left flank : CAGGAGGCGAAAATGACGACATGGAAACCGATACACTGCGCCCCGCATGATCGGGTTATCCTCACCGATGAGGGAACAGCTCGATATGTCAGCGCTAAGGAAGCCGGTGTCGCCGGAGCAAGTGGTTGGTATCTTTGCTATTCATGTGGCGACTTACCCCTACCACCAGCCAGCGACAGTCCCGACTCGTGCTCCGTGTCACCCAGAGTCTGGATCGATCTCCCAAAGCTGGGAATCCCCCAGCGGGACATCTCCATCACCCCTCGGCCTGCCGATCTGGGGGCGGGTTGGCAACTGAGGTTGCTGGAGCATGGAGAAGAGGTTGGGGGAGGTGTTTTTCCAGCGGGCCCCAGTCAGTTCGAGCAGGACAATGCCTATAACGAGGCCCTGGCGGAAGCCGATGAGTGGTTGGATAGTCTCTATGGCGACCACCAAAATGCCAGTGCATGAACACCTGCGAACATGGTGATATTGTGCTGCTATTTTCGTTATTATGAAGG # Right flank : AACGGGCCGCCCGAATCAGAACATTGGAGTTCCCCCTACAGTTTTTTTTGCACTCAATTTGATGAATACCCCTCTCAAAAATCACCAAAAATGCATTAGCCTATCCTCACAGGGGTATTGTATATTTCTGGTGCCGAATACTGAGTGAGAGTGAAATCATGGGAGTCAGGAAAAAGGCGTACCCCCCCGTAGATGATGCCGATGTAGCGTTGCAGAATGAAGCGGGCCCCGTCGCTTTGCAAGAAACCCCTAAGCAGCATAGGTTCATGCTTCAGTTCGAGGCCTGCGTCATGGAGTTTGATAGTGCAACTGGTACCGCCGTTGGGCAGAGAAATCGCGTTCAGGAGCTGCTTTCTCTGGGAGCAATCCGGCAGCTTTATTGGAACCTTGTCGCGGATGGGGTTGTCGCAGAAGCGGCTACTGTGGCCAATTGGTGGAAGGAAAATCACTCGAAACATCAGTTGGGGGAGCTAATTCTATGAAAAATGTTGGCTCTCATT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGCACGCGGGAGGGTTAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 89504-89111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038446.1 Aeromonas media strain R25-3 plasmid pAeme3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89503 29 100.0 32 ............................. CCTACGGCGGGGAAACCAGCGAGCTGGTCGAG 89442 29 100.0 32 ............................. GCGGCCAGTTCGGCAGCCAGGGAAGGATCGCG 89381 29 96.6 33 ..................C.......... AGTTGCTGGATTGTTTCGAGTTGGTCGTTATAG 89319 29 100.0 32 ............................. GCGCTGACCGCCGCACAGCGAGCTGCCCCCGC 89258 29 93.1 29 ..........CA................. ATCTCCCACCCAATTCTCACCGTGATAAA 89200 29 89.7 32 ..........CA................T CTATTTTGGTCACCGTTACCAAAAAGGATTCC 89139 29 82.8 0 ..........CA........A....C..A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTCTCTCCCGTGCGCGGGAGGGTTAACGG # Left flank : TATGTCCGGCTCAATGGCCAAGAGGTCCATATCGCCGAGACGGTCGCCAACGACAATCTCTGTGCGGCCAGTGATCAACGGATCCGTCGAGAAATAGCAACCCAGATGCGAGTGATGCAGCGTCAGGAACTGCGGCGGCAAGAGCGGATCTACAAAGGCCGCTCGCCGGGAGCGGGGGCTGGTGGCTATAACCGGGATCTGAGTAGCATCGAGCACAGGATTGATGATGCTCGGGTCAAAATTGACATCCTCAATGGAGAGCTTGTCCGGAGGCGTGGAAGTGAGCCCCACGGAGGTTGATGCCAGCCAGAGGAGCTGAACCGGCTGGTGGCTGGACTGGGCAAGCGGGAAGGTAAACCCGAAGGTGATCTCGATATGGACATGTTTCACTCGCTGTCAAACTGGATAGCGTTTCAGCGAGACTGTCAGTGCGAAAAATGAGAGTGTCAAACATCGCTGAATATGCTGACATCGTGCAATCATCTTCGTTATCATTAAGG # Right flank : GACTGAACTTAAGCCCCCTTTGGCCGAACTGTCTCTCTCAGCGCGATGTGGGGGAGGACGTCAAGAGTAGATCTCGCCCAATGCCTTACGGGCCAACTCCGTGAACTGAATTTCGAGGTCACGACCGACCACCTTCAACTTCAACAGGTCGGTTGTGCAGGCTGTTTCGCCAGCCCGCATTGACAGCCAGAGCTTATGGCTGGCGATTTCCGTGGGATCCGGTGTAGGCAGACACAGCCATTGACGAAGGATCTGTTCCAGCTGGCCAATGAAGTGGAACTTCACCCGCTTGTCGGTGCCGATGAAGTTCTTCAGCCGCTCGGTTTCGTCGATGAGTTTGCAGTTGGCCAGCAGCGTCTTGAAGCCTTCCTTGAGCTCGCGCTGTAACAGATCCTTTGTAGCATCCTGCTCTGCTTGGCGCCCGGTCTCAATGAGCCGGGTATTGAGGAGCGCCTTGCGTTCCGCCTTCTCGATCACAATAGTCATCACGTTGTTGAGCA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGTGCGCGGGAGGGTTAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 100410-99954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038446.1 Aeromonas media strain R25-3 plasmid pAeme3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 100409 28 100.0 33 ............................ CATCAGGGCATGTCCGGCCCCGCGTTTTCCCGT 100348 28 100.0 33 ............................ TAACGGATGATTTTCCGCAGTTGGCGTAGAACC 100287 28 100.0 34 ............................ ATCTGCTGTTTGATCCATTTTTTGACTCCTGTAA 100225 28 100.0 33 ............................ GGATACGCCGGAGCTGATGGCCGGGCTGTAGAT 100164 28 92.9 33 ...C...............A........ GGCTAATGCTCAATGGAAGTTTTTCTTGGAATC 100103 28 100.0 33 ............................ GGGCTCCGAGGCCCGCGAGGAGCAAAAGCGTCT 100042 28 100.0 33 ............................ CGCCTGGCTATGCAGGCCAGCAAGCTGGCCGCC 99981 28 82.1 0 ...C...................ATTG. | ========== ====== ====== ====== ============================ ================================== ================== 8 28 96.9 33 GTCTCTCCCGTGCGCGGGAGGGTTAACG # Left flank : GGCTGCCTTTTTACATTCTACCCAGGGAGGTTATATGTCCAAGCAAGAGCCTTTGACGATAGAGGTTGCGGCAGAGCGGCTATCAGGCATTGTCAGTGCAGATTACAAGTGGCCGGAGTTGCTGCCGGGCTGGCAATTAGAGTTCATCGCGTACCCTGAAGGTGATCTCGATATGGATATGCTTCACCCGGTGGCCAGGGTGTTTTGGTCCGATGATAATGAGCCTTTGCCTCTTCCCTACAAGAGTGATGAAAGCCCGATAACAGTCTGGGATTTGATCGCCGTGAAGTTGCCGTACATGACCACGTTTGGCTATGCAACGGTTGTGGACAAGCCAAAAGACTCGCACCTCAGCCTTGTTCCCGGTGAGCAGGTGTAGGCCTTAATAGCCGACAGCCAGAGGTGATAGAGTTTCAGAAAAAGTGTCAGCACGAAAAATCAGAGCTTCAAACATCGCTGAATATGCTGACATCGTGCACCCATCTTCGTTATCATTAAGG # Right flank : TGGGATCAGAGATCGCTCACCGTGGGTGAAAGATGTGGCTGAGGGCTGATATAAAAAAGGGGCAACCGACGATCTGGTTGCCCCTTTTGATTTTACCCCCTGCGAACAGGGGGACGGATTATGCGGTGATACTGGGGGGGCCACAAGAAAATAGCCGATAACCACCCGCGCACGGGTGGATGAAAGAGGATGTGATTAGCTGGCCTTCTTATTGAAAGAACTGGTCACGTCATCGCACCAGGCTTGATAGGCTTCCTTCAGAACATCCCCCTCAAGACGGAATCCATCCTGGTCAAACTCTACCTTACCGACGGTTACCGGCACCATCGACTTGGGCTGCCAAGTTTTGACTTCCCAAGACCCCGATACCAGTCCGCAGCCATGGGCGAGATGACCACCCATACGGGGGGAACGGGCAAACTCCAGCAGGGCGGCCAAGAAGAAGCCCAACTCGATCATGTTGACGCCCTTCAGACCGATCCGGTGCTCCATGACTGTTC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGTGCGCGGGAGGGTTAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //