Array 1 6622-9095 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEQ01000011.1 Neisseria lactamica strain M37179 M37179_CHA4079A28_cleaned_ctg_1980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 6622 32 100.0 34 ................................ AGGTTATTAGGGTTCAATGCGTTGTTCATAGCGT 6688 32 100.0 35 ................................ AGTGCTATTCATTTTTAATTCCTCCAAAATTCATG 6755 32 100.0 33 ................................ AACCCATTTGTTTCCCGGCGCATCCTCAAATTC 6820 32 100.0 33 ................................ CGGTATGACATCACGAAGCGGGGCGGACATGAT 6885 32 100.0 33 ................................ TTGGATATGCATATGAAGATTAGCGCCCTGCGT 6950 32 100.0 34 ................................ TGATTAAGAATAAGGCGGACGCAAACCAAATGCC 7016 32 100.0 35 ................................ CGAAATTCCTTCTAATATTAATCAGGTAATCAAGC 7083 32 100.0 35 ................................ CGGGTCAAGGTAGCGTTGCAACGTGTACATTTCTG 7150 32 100.0 34 ................................ AAAGGTGGTGATATGGACAAATTGGCAGGTAAAT 7216 32 100.0 35 ................................ TATATATTGTAACAGCTTGACCCATTTTGCCAACG 7283 32 100.0 33 ................................ CAATGTATCGAACAAACCGAAAACGTAGTTAAT 7348 32 100.0 35 ................................ CATTTCGGATACAGGCTCTGGGCAACTATCACGAA 7415 32 100.0 34 ................................ GCTTCACAAGGAAAGAGCGGCTATCTTCATTCAG 7481 32 100.0 32 ................................ CTTTAAATTTAATGGTATTTAGATTATTTACC 7545 32 100.0 33 ................................ CAGTCGTTGAACCGCATGATGTTTGCCAGATGT 7610 32 100.0 33 ................................ CAGTCGTTGAACCGCATGATGTTTGCCAGATGT 7675 32 100.0 33 ................................ GATGTTTCCGGAGAACTTTTTAACGCCAATGAT 7740 32 100.0 35 ................................ TACGATTAACGGCGACTTGCAGTATATGCGCTCGA 7807 32 100.0 33 ................................ CAGTCGTTGAACCGCATGATGTTTGCCAGATGT 7872 32 100.0 33 ................................ GATGTTTCCGGAGAACTTTTTAACGCCAATGAT 7937 32 100.0 33 ................................ TATGGGGCATCTGCGTTATCAGGATAATATCAA 8002 32 100.0 36 ................................ TATTATGAAAGCCATTATGACGCGCTTATACAAGCG 8070 32 100.0 33 ................................ TTGGGAGCATTGCGGGAAAGACAAATCTATCCG 8135 32 100.0 34 ................................ CCCCTCAACGAACCGAAAACGACAAAAGCCGACA 8201 32 100.0 34 ................................ CGTTATTTGTCGGTTTGTCTTATAAAATGTTGAG 8267 32 100.0 35 ................................ AATCCATTCAAAACAAAACAGACACACCGAAAAAT 8334 32 100.0 34 ................................ CAAGTTTGTCCGCGTTTATGAGAAAGGTAGGCAG 8400 32 100.0 36 ................................ GTTACCATCGAGCATAAGACCACGACGCGTCAGGGC 8468 32 100.0 34 ................................ ACATTAAAATAACAATAATTAAAAATACATCCTA 8534 32 100.0 34 ................................ GATAAAACATTTTCTGTATTTTGATTTGGAGTAA 8600 32 100.0 33 ................................ CGCCCAGCATCACAAGATTCAATTTGTGCAAAT 8665 32 100.0 34 ................................ ACAGCCGCGCCGTTACTTGTTTTCAGGACATGAA 8731 32 100.0 38 ................................ GGCGTCAAAAGCGTAGTTGGTGTTGATAACGGCGTTGT 8801 32 100.0 34 ................................ AAACGCGGCAAGGTCAAGATGATGACGCTGTCCG 8867 32 100.0 34 ................................ ATCATAAAACAAAATATTAGTGATGTATCCACCA 8933 32 100.0 34 ................................ AGACGGTATTTTTGACGGCAAATTGATTCGTCAG 8999 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 9064 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 38 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGGTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATTTAAATAGAGAAAAAGTAGAGATGTGTAAATTGAATTATTTCAGCATTGCCTTGTTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCTACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCTAAGGCGGAATATCGCAACTTCTGATAAGGATGGCAATGATTTCCCAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14703-14528 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEQ01000011.1 Neisseria lactamica strain M37179 M37179_CHA4079A28_cleaned_ctg_1980, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 14702 29 96.6 43 ..........................G.. TCGTTCGGTTTCGCTTGTTTTAAGTTTCGGGTAACTTCCACTT 14630 29 96.6 45 ...............G............. GCGTTGAGTTTCAGCTATTTAGAATAAATTTTGAAACTCTAATCG 14556 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 3 29 97.7 44 CGTCATTCCCGCGCAAGCGGGAATCCAGT # Left flank : GCACTGCTGTTCGATGCCTACCATCCTTCGGAATACGGCGGCACCGGACACTGCTTCGACTGGACGCTGCTGGCGGAATATTCGGGCAAACCGTGGGTGCTTGCCGGCGGGCTAACCCCTGAAAACGTCGGCGAAGCCATCCGCATCACCGGAGCGGAAGCGGTCGATGTATCCGGCGGCGTGGAAGCGTCTAAAGGCAAAAAAGACCCCGCCAAAGTTGCCGCCTTTATCGCAACCGCCAACCGCCTATCCCGTTAAAGCAACAAAAATTGCCGCCGGAATGACTTATAGTGGATTAACAAAAACCAGTACGGCGTTGCCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAAGTGAATCGGTTCCGTACTATCTGTACTGTCTGCGGCTTCGTCGCCTTGTCCTGATTTTTGTTAATCCACTATAATCTAAAAAATTTATGTTATTAAATCAGTAATTTCTGATGAATTTTGAAAACTTAATCC # Right flank : TTTTTGAGTTTCAGTCATTCCCGATAAATTGCCTTAGCATTGAATGTCTAGATTCCCGCCTGCGCGGGAATGACAACGGAAATCTTGTTTATATTGAATCAAAAAAACCTGCACCTTAATCAGTTGGCGGTTTAGTCCGACTTTTGGGGTGCAGATCAAGCTTTCAGACGGTATTTCCTTTAAAACTTCATTTCAAGCGCGAGGCTGAAGTTCCTGCCCGGTGCGGCATACCTTCCATAGTTGCTGTCTTCGCTGCGTCGGTTTGCCGTGCTTTCCGCAGTCTGGCGCAACGATTCCCAAGTAACGTAGCGGTAGTTGCCGATATTGTAGATAGCCGCCCTCAAGGTCAGCCGTTTTTTCAGATTCAGATAGGCGGAAACGTCTGCCGTCGACCAAGAAGACGACGCTCTTTTTGTCGAATATCGTTTTTGATCGCCTGCCAGATAAGCAAGCTCGTCAGGGTTTTTCCCTTTGGAATAGGTCAGCATAATGTTTGCGCC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGCAAGCGGGAATCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //