Array 1 1-1523 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFY01000161.1 Acinetobacter baumannii strain ABBL068 contig-37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 121 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 181 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 241 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 301 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 361 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 421 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 481 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 541 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 601 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 661 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 721 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 781 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 841 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 901 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 961 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1021 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1081 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1141 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1201 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1261 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1321 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1376 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1436 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1497 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5013-10562 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFY01000009.1 Acinetobacter baumannii strain ABBL068 contig-1000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5013 28 100.0 32 ............................ AACTTCGAATACAGCTCAAGGGCAAGCTGTGC 5073 28 100.0 32 ............................ TATGGTGGTTATTCATACTTTAAGCCTGGCAC 5133 28 100.0 32 ............................ AGTAAGAACAACTGCAAGTGGTAAACGTTTAG 5193 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 5253 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 5313 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 5373 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 5433 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 5493 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 5553 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 5613 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 5673 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 5733 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 5793 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 5853 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 5913 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 5973 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 6033 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 6093 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 6153 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 6213 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 6273 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 6333 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 6393 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 6453 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 6513 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 6573 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 6633 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 6693 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 6753 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 6813 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 6873 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 6933 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 6993 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 7055 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 7115 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 7175 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 7235 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 7295 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 7355 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 7415 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 7475 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 7535 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 7595 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 7655 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 7715 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 7775 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 7835 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 7895 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 7955 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 8015 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 8075 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 8135 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 8195 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 8255 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 8315 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 8375 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 8435 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 8495 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 8555 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 8615 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 8675 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 8735 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 8795 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 8855 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 8915 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 8975 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 9035 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 9095 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 9155 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 9215 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 9275 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 9335 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 9395 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 9455 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 9515 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 9575 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 9635 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 9695 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 9755 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 9815 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 9875 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 9935 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 9995 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 10055 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 10115 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 10175 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 10235 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 10295 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 10355 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 10415 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 10475 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 10535 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 93 28 95.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //