Array 1 11609-12092 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214260.1 Thermus tengchongensis strain 15Y Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 11609 35 100.0 43 ................................... TCGAGGAGGCGGCTCCAGATAGCCGCCTCCACCATTTCCATGA 11687 35 100.0 41 ................................... AGTTACCGTTCCTAAAGCAATCCCCCTAACCATATTTTCCT 11763 35 100.0 40 ................................... CCGACACCCTCCCTCAGGAAGCGGGCCAGGCGGCTCTTGA 11838 35 100.0 38 ................................... CCCACGGGATGACAGCGTGCATGCCGTCGCACGGGAGA 11911 35 100.0 41 ................................... AGGAACTCCCAGGTCTTCATGTCTGGTTTCCTCTTCATGGG 11987 35 100.0 36 ................................... GGTTTCGGCGGAAAGCACCCCGACCCACCTTTCGAA 12058 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 7 35 100.0 40 GTTGCACCTCTTTAGCCCCGTCAGGGGATTGAAAC # Left flank : GAGCTACGATATACCCGATGACACCCGGCGTCTAAAAATGGCGGCTCTCCTGAAAAGCTATGGAGAGAGGGTTCAGCTATCGGTGTTTGAGGCCGAGCTCAACCCTTATCAACTAAAGAACATGCTCGGCAAAATCAGAGAGCTCATGGAGCCAGAGGACTCGGTTAGGGTCTATCTGTTGGGGAAGGATTGGAAGAAGCGCACGCTTACCCTCGGACGAGCAGCACCCCTGAGCTTTCCTGAAGACGATGTGATTTAAGTCATAGGGGTACGCGGACTATCCACTACCCTAAGTACAAGCAAGAAACAACACATTCAGCACAGGACTTTTTGGAGTCTTCTAAGACCGAGTATAGGCACCCCCTTCGGCAGGCTTGACTAGGGCAACGTTTTTGGCTACTATCACATTAGGTTGGAAAGGGAAACGCAGACGAGCGAGTACCCCTCCGACCAAGTGGATCTTGAAAGCCTGGTGCAGGACGATGGTTTTAGAGGGGGGA # Right flank : CGCCTCTTCATCTCTTGTCTCATGCTGGGATGAGACCTCCTCCGAGACGTCCCGACTGCGGATGGTTCTCACCTTAGACCTGGCCTGCTCAAAGCAGGGCCTCTTGCACGCAGTCCCACTCACGGCTAGCCTGTTCACACGAGGGGCCAAGAATGCACCTTCTGCTGATCTCTTTGGTGGGCAACGACCCGGGGCCAGTAGCCCTTGCAGCCAAGCACCTCCGCAAGACCACACCCCGTGGGACGGACCTGTCTATTCTTCTGGTACAGGACGGCTCGCAAAACGTACCCCTACGGAAAGCTAGGCTCTCCGCCCTTCAGCATTGGTTGCAACAAGAGGGATTTTCCGTCCAGGTGCGAGAGTCCTTGGAGGCCGCACTTAACGAAAGCGCTGATTTTCCAGGCCGTGTCGTCTTGAACCTCACCGCCGGGGATAAAGCCTCTTTTTTCCGTTTTTACCAGTCAGCCAAGAAGCACGGCTGGGAAGCCCTGGTCATAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCTCTTTAGCCCCGTCAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 28070-26567 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214256.1 Thermus tengchongensis strain 15Y Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 28069 30 100.0 38 .............................. TACGCCTCCGCCCACCGCTCCAAGGCCCGCTCCCGGAG 28001 30 100.0 38 .............................. GGCTCCTCGCTGAACTGGCTCGCCATCAGCCCAGCCTG 27933 30 100.0 37 .............................. TTGCGGTTCCCCGGGACGGCCTCGCGGGCGAACTCGT 27866 30 100.0 36 .............................. TCTCATTGAAGCGCTGTTTGCCCGTCCGCATGTGGT 27800 30 100.0 36 .............................. GTTGGCCGCCCTTCCCGCTTCGGGAACCCCTACCGC 27734 30 100.0 35 .............................. GTAATCTCGCTAGGGGCCCCCAACACCTCCTGGGT 27669 30 100.0 37 .............................. CCCGCTAGGGGCCCGGGGCCAGGCGTTCTCACGAACA 27602 30 100.0 37 .............................. GCTGACGGCATTGGCGGCATACGGCGCGGCCTGGGGC 27535 30 100.0 37 .............................. CCTTCGGCGGGGGCCTCGTCGATGACCCGGGCGATGG 27468 30 100.0 38 .............................. CCGCCATCGACGGCACCGCCCAGCGGGAAGTCCCCCTG 27400 30 100.0 37 .............................. ACCTTGCCCCCACCTGGGCATCGGGTGGGGGCAAGAC 27333 30 100.0 37 .............................. CCCCGTTCGTGGACCAGGGAGGTGGCCAGGGCCACCG 27266 30 100.0 36 .............................. TCCCCCGAGGTGGCCGTGGCGGTGGCCCTCAAGCGG 27200 30 100.0 38 .............................. GTCGCCGTGATGTCCAAGGACGCGCTGCCCGCCCCGGC 27132 30 100.0 35 .............................. CGCCTGGCCTACCCCTGGGCCCTGGAGGGGGAGTG 27067 30 100.0 39 .............................. TAGGTTGGGCGCCAGTATCGCGTAGCCCGCTTGTGGCGT 26998 30 100.0 36 .............................. GGGCGCATGCGCCTGCAGGCGGTCCAGCCCCTCCAC 26932 30 100.0 34 .............................. TGCACCTGATAGGTTCCGGCTGGCCCCTGTACCC 26868 30 100.0 36 .............................. TCGGCACCGTGCTGCGCCACCCCGAGGGCCACCTTC 26802 30 100.0 38 .............................. CATGCCCTCCTGCCGCGGGTGCGGCGGGCCTGCTTGGA 26734 30 96.7 36 .............................T TCCCGCATCTTGCTCAGCCTTCGGCTCATCGTCAAA 26668 30 96.7 42 .............................T CCTCTCTACGGCGCAAGGGCCGTGGTTGGACCTGCTGGCGGA 26596 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ========================================== ================== 23 30 99.6 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Left flank : TGTATGTAATCCTTGTTTACGACGTTGCCGTAGAGCGGGTGGCAAAGGTTCTCCAGGTGGGCAGGAAATACCTTACCTGGGTACAAAACTCCGTCCTGGAAGGAGAGCTTACCCCGGCACAGTTTGCCAGACTGAAAGCAGAGTTGAAGAGAACGGCGGATCCCTCCGATGCTATACGGTTCTATGTACTTCCCAACAAAAATGCCCTCCAAGTAGAAGTGTTGGGTACCTCTAGAAACGAACCTAGCCAGATCATCTAAAGCGCGGTGTCCTCATGTTCCAGAGCTGTGCTTTCTCCTCGGTGAAGATCCAGAAATTGGACTTGGTCAAAGAATGCGCCAACCCTCAATCGTGCAAAAACCCCGGGGGGTTGATGCAGTAGGGGGAGGTCTGCTATTTTGTGCATAGGCAGCCGCTCTTTGCTTGTTCGGCTGCAGGGGTTCTTGATAAGAAAGCTTAGAGTTCGATGAGAGAGAAAAGTTCTGGAGCCAACTCTGGCC # Right flank : AACCTCCACCTCCGCCTGCACCTTGAGCCCGGCGCGGTCGTGTAAGGAATTTTGTGTAGGGGTTTGTGTATGAATGGGGGTACCAGCTGAGGGAGGAGGTACCCCGTGGATCAGAATACCCTGCAGGCGGTGTTGAGGGAAGCGATGAGGGAAGCGGTGGCCGAGCTTTTGCAGATGCTGCTGCACCTGGACCGGGAAGCCTTCTTGCAGGAGCGAGGCGGGCGCAAGAACGGCCACTACCCCCGCAAGCTGGAGACGACCTTTGGCCAGGTGGAGGTGGCGATTCCCCGAGACCGGGAAGGGCGGTACTACCCCAGCTTCCTCCAACCCTACGCCCGCCGCCTGGTGGACGTGGGGGGTCAGCCAAAGGCTATGTTCTGGTGGCGGTGGCCCTTTACGCGGCTGGGGTCAGTCAGCGCAAGGCGGCCGAGGTGATGAGCCTGCTGCTGGGCCACCGCTACACCCATGAGACCATCAGCGCCCTTACGGACCAGGTGCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 36981-39421 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214256.1 Thermus tengchongensis strain 15Y Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 36981 30 100.0 36 .............................. GGGCCTTGAAGGACCACACTGCGCCGGGTTCAAGAT 37047 30 100.0 36 .............................. ACGGGAACCCCCAGGTGGAGTCCAAACGCTGGGTGG 37113 30 100.0 37 .............................. CGGCTTCATGCAGGTACACACGCAGGTCCAGCCCGTA 37180 30 100.0 37 .............................. CTTTGGGGGTGGAAGGGCGCACCTGGCCTGAAGCGCA 37247 30 100.0 39 .............................. TCAGGGCCAGCGAGCGAGGTGAGCCCGTGCCTGCAGCAT 37316 30 100.0 37 .............................. GCATTGTAGTTAGCCGTACCCAGCGGAACGGCCACGA 37383 30 100.0 36 .............................. CTCAGCTGGGCGCGGGAGCAGACGCCCGAGGCGCTG 37449 30 100.0 37 .............................. ATGACTCCACGGCGTACGCCCTGAGGGGTGCGGTGTG 37516 30 100.0 37 .............................. AGGCCCTGGGCGATGCTGTGGCCACGGCCCGCTACCA 37583 30 100.0 36 .............................. GTCTACATCATCCCTGAGCGCATCGTGCCGGAGGTG 37649 30 100.0 37 .............................. CTCCCCTTCCCCCCGCCAGGCCAGGGCCAGGAGGTAA 37716 30 100.0 35 .............................. CTGGCTTCTCCGAGGCGGTGTTCCGCAGGCACCCC 37781 30 100.0 37 .............................. CCGCACCGGAAGGGCCACGGTGAGGTAGGCGTTCCAG 37848 30 100.0 37 .............................. CTAGCGCATCGTTGGGGTTTTGGAAAAGTAGGCCCCG 37915 30 100.0 37 .............................. CCGCCCAACGGGTCCACATGCCCTCGAGGAGCCGCCG 37982 30 100.0 40 .............................. CCCACTCGGGCAGGAGGGTGCTGGGGATGATCCAGTACCG 38052 30 100.0 36 .............................. CTCTATCGGGCGATGGCCCCCCTGGTGAGGGGCACC 38118 30 100.0 37 .............................. GGCACCCTCTCCAGGAACCAGCGGGCGAAGCGCTCCC 38185 30 100.0 37 .............................. CTCTTGCGGTGGACACACCTAGAAATCCGCAAAGCTC 38252 30 100.0 40 .............................. GTCCACCTGGTCGGCCAGGGTGTAGGCCGCCCGCTGCGTG 38322 30 100.0 37 .............................. CCCGTCTTGGGGTCCCGGACGGCCATAAGGCCGCCCC 38389 30 100.0 36 .............................. GACCACGTCATCCACTACCCCGACGGCTGGAGGGCC 38455 30 100.0 37 .............................. CTGGGACCCGGCTGAGCTGTACGAGGAATGCCCTCAG 38522 30 100.0 36 .............................. CTGGCACCGGGTGCGGGTGGGCGCTGAGGAGGTGCC 38588 30 100.0 36 .............................. CCGTATCGCTGCCGAGCTGCAGACCATCACTGGCGT 38654 30 100.0 35 .............................. CCCGAGCGGCAGCGCCTCATGCGGGAGGCCCTCGA 38719 30 100.0 36 .............................. CTTGCAGGGGACGCTCGCCGGTATCGCCCGCATCAA 38785 30 100.0 37 .............................. TGGGTGTACGCCCATGGGAATATGGGCGTACAGAAAG 38852 30 100.0 37 .............................. ATGACCCGGAGAAGCGCTGGGCGCACATCCTCCGGGG 38919 30 100.0 37 .............................. ACGTAATGGCCCCTGGGGGGTGGCTCCTTAGCAAGCA 38986 30 100.0 34 .............................. ACCAGCATTGTCTTGGCAGCTTTAGGCGGGAGGG 39050 30 100.0 41 .............................. CTCGTCCAGATAGGAAAGGGTGATCTCGTTCAGCTTGGCGT 39121 30 100.0 37 .............................. ACCGGGAGCATGGTGCGCTTGGGCCTGCTGAGCGTGG 39188 30 100.0 37 .............................. GAGAAGACGCCGCATCCGCCCCAGGCACCTTAGTCCT 39255 30 100.0 39 .............................. TCCCGCGCGTAGCGCCGGAGGGCGGCCAGGCGCTCCCAG 39324 30 100.0 38 .............................. CCCTGACCGCCGCCGGTGCGGTGGTCATCGACGGGGCC 39392 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 37 30 100.0 37 CTTTGAACCGTACCTATAAGGGTTTGAAAC # Left flank : TTGTTGCTGAGGTCTTTAAGCCGATACTGGTGGACCGGCTTATCTTTCGCCTCATCCGGAGGCAACAACTGAACCCAAGGCACTTTCTCCGGGAAGGAGAGGGAATTTTCCTCTCCGAGCACGGGCGTAAGCTCGTGGTGGAGGAGTGGGAGAAGAGCCTGCAAGCCACTTACCGCCACTTGCGCCTTAGGCGCTCTGTTTCTTACAGAACGAGTTTGCGCCTCGAGCTGTACAAGCTGGAAAAGCACCTGATGGGCGAGGAGCCCTATCTCCCTTACCGGTTAAGGTAGGCTTGGCTGGCAGTTTAAACAGCATTTTTTACCTGGCACAACAATGCGCCAACCCCTGATCGTGCAAAAACCCCGGGGGGTTGATGCAGTAGGGGGAGGTCTGCTATTTTGTGCATAGGCAGCCGCTCTTTGCTTGTTCGGCTGCAGGGGTTCTTGATAAGAAAGCTTAGAGTTCGATGAGAGAGAAAAGTCCTGGAGCCAACTCTGGCC # Right flank : CCCGCCATGCGCCGTTTGGCGGACCAAATCAACGCCAGCTTTGAACCGTACCTATAAGCTGAGCTCCCCCTCTAAGTTCGGACATCTCAAAACTTGCACTTATCCACCCCCCGCATACCCATGCGCCAGGGGACCACTTGAAAAGGGCCGCCCGGTTCCCTTCGGATGAAGGGTGCCATGCACCAGACGGCCCAAGCTCTACTCTAGACCCTCCTGGCCCCCCTGCCAACCCCCCACCTCCGGGAGTCCCTCAAAGCCCTGCTCTATCTCCTCCTCACCGGCCACGGCAAAGCCAGGCCCCAGCACAGCAAGACCAAGTCCCCCTCTTGCTTACGCAAATCTGTTTGCCCTACGGGCAAGGCAACCGCCCTTTCCCCCTTCTTCAACCGCTATCCCTGGCCCACCCGCACCCTCATCCGCCTGGCCCGTCAAGAAGCCCAAGAGGCCCCCCACCGGGCCAGGCCCAAGCGGGGGCCCAAGCCCTGCCCCTCGCCTTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACCGTACCTATAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 6257-6525 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214276.1 Thermus tengchongensis strain 15Y Scaffold38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 6257 36 100.0 40 .................................... GACTCGCAATACGGGCCGTAGCCGCCTTCGGAGTAGTAGG 6333 36 100.0 42 .................................... ACTGACCAGTCAGTCATATAGGGCCCAGAAAGTAAGGGGCGG 6411 36 100.0 43 .................................... TCTATTGTTGATCCGTACCGGGTGCGGACGACCCGCACCCATA 6490 36 91.7 0 ..............................C..A.A | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 97.9 42 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CAGCCTTTCCCGTTTCATATCGGAAGGATACCGGCCTAGTACGCCCTAGCGCAAGCCCGTGGGGCGGAAGGGGTGGGAAGGGCCTCGAGGCGGCCATTCTGGGCCGGGAGGGGTACACGCCCTTTTACTTGCGCCAACGATAGCCGCTATAGAAGTGTGCTTTGTTGCGGGGCAAAGGCGCGTCCTAAACTTCAACCAAGCGAAGTATCCTTGAGCGCAGAGGTTTGGGGGGTAAAACCTAGACTCGGTACATTACAGCCCCTATTTGGTATAATGCACCTGTCCGGAACCCCGGACGGGCATCTTGAAAGCCAGCTTCCTCCGTCCTGCACGCGAGTATGCGTTTTCCCCTTTTCATCGCCCCTTTCTCCTGTGGCTTCCCAAGGGCGCAAACCCTCAAAAACCCCCGTTATTCGCCCCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCAGGACGATGTGCAGAGGGGGTACCC # Right flank : AAACCAGGCCCCTCGAGGCCCCTACAAGGGCAACACCAGGGGCCTCTCCCGCCCAAAGTGCAGGAGAAGCACCCCTTCCCCCGACTCCAAGAGGGCCAGCAGAGCCTCCCGCATGCCCAGGAGGAGCTCCCGGTGGGCCTTGGGAAGCCCCGCCAAGGCCCTGTCCAGCCCCTCCGGCCCCTCCTCCCGCCACACGGCCAGGGCCTTCAGGGGGCGCTTCCCCCTCCTGGCCTCCCCGTAGGCCAGGGCCTCCTCCAAAAGGGCCTGGCGGTCCGGTGGGGGCGGGCCCTGGGGGCTAGGGGAGAGCTTGATCTCCACCGCCCCCACCCGTTCCCCCCGCAGGCGGTAGGTGCCGGGGGGAAGGAGGCGGGCGGGGTTGCGCCCTGGGGGAAAGTGCACCAGGAGGGTGTGCCCCCGCACCTCCACCCGCACGTGGGTGGCCAGGGTGGGTACCTTGCGGGGCGCCTTCTCCTTGGCCGCAGGCCTGGCGGGAGGCTTCT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 83-415 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214277.1 Thermus tengchongensis strain 15Y Scaffold39, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 83 36 100.0 39 .................................... CAATGGTTTCTGCACGATTGAGCAACACTTCGCGCATTT 158 36 100.0 36 .................................... AATAGCCCAAAGATGGCTCAGCGCCCCGGAGATAAT 230 36 100.0 41 .................................... AATACGACGATGGCGTCAGCATCCGGCACCGCACGCATTAG 307 36 100.0 37 .................................... GCCTGGAGAAGGAGTTTGGGCCGCTCCACTCCATTGA 380 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 38 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCTGGACGATGCGCAGAGGGGGTACCCG # Right flank : CTTGGAAAACGGCCCCGTGCCGCAAGCCGTCTCGGAATGAGACGCTCGTCCGCGGGATTGGGGAGCAGTCGCGGCGAAGTGCAAACCGCACACGGCAAGAGGGGGGAAGCGGGTATAGTTTCCTCATGGCAGAGCCAGTCCACGTGGCACTGGCAGCGCTGGTTCACGACGTGGGCAAGCTCCTCTCCCGCGCCCGCTGGGGGGAGCGGGACGATGGCATGCCCGACCGCACCCATACCGCCTACACCGCCCTCTTCGTTCGGCAACACGCCGGGCTCTTCCAGAAGGCGGGCATGGACCCGAAGTGGCTGGAGCGCACCGCCAGCCGCCACCACGAGGGCTGGCGGGACCGCCCCCAGTACCAGCCGCAAACCCCCGAGGAGTGGTGCGTGGCCCTGGCGGATACCTACGCTTCCCAGGAGCGGGAAGGGGAGGGCCAGGGGGGAAACGTGCCCGAGGTGCCCCTTTGGCCCATCTTTCACCAGCTTCGGCTCCAAGGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 8646-7946 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML214277.1 Thermus tengchongensis strain 15Y Scaffold39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8645 36 100.0 40 .................................... CCGGTACTTATCGGCCTTGCCCTCGTCGCCCCGCTCAAGG 8569 36 100.0 40 .................................... TCCCCCCTATTGGCCAGTACCTCTTCCATGGGTTTCCCGC 8493 36 100.0 35 .................................... TCCAAGATGGCTGCCCTAAGAGCCTCCTGAATAGC 8422 36 100.0 38 .................................... TAACCTCTGCTCCGTTTGCCTCGGGCCCCTTACGCCGA 8348 36 100.0 38 .................................... AGCCTCCAACACTAAACCAGTCAGGATCTTTTTCATCT 8274 36 100.0 39 .................................... TCTTTTTCATCTTCTCTCTACCCCCTTTCTGCACGCCCA 8199 36 100.0 37 .................................... GCCTCCAAAACGGCCTCCTCAAGGGCCTGCCTAATGG 8126 36 100.0 37 .................................... GACAACCCTGCTAGCACACGCAGCTCTGCTTGGCTGT 8053 36 100.0 36 .................................... TTGCTGACCCTTTTGCCAGAGAAAACCGTCCTTCCG 7981 36 88.9 0 ......T.......................C..CT. | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 98.9 38 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTCGCATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCTGGACGATGCGCAGAGGGGGTACC # Right flank : GCTTTCTGGGCGGGCAGGAAGGCACGTCGTGAAATTTGGTCATTCAATGAAGGTATATCTCTCATTTCGTGGTAAGCTTTACCCATGCTCCCACGGCTCCTCGAGGACCGCCTCCAGCTGCTCCTGACCCTCTTTCCCGTGGTCTTCCTGGCCGGCCCCCGGCAGGCGGGCAAGACCACCCTGGCCCTGAAGCTGGCCGGGGAGCTGGGCCTGGCCTACCGCACCCTGGACGACCCCACGGAGCTGGCCGCCGCCCGCACCGACCCCAGGGGCTACGTGGGGGCTCTGCCCGTTCCCACCGTCCTGGACGAGGTGCAGCGCGCCCCCGAGATCTTCCTGCCCCTGAAGCTCCGGGTGGATCGGGAGAGGAGGCCGGGGGCCTTCCTCCTCACCGGCTCGGCCAACGTCCTCCTCCTGCCCCAGGTGGCCGACGCCCTGCCGGGGCGCATGGCGGTGGCGCGGCTTCTGCCCTTGAGCCAGGCGGAGCTGGAGGGGGGAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //