Array 1 66316-67593 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POKJ01000232.1 Streptococcus suis strain 1383 SS_1383_Contig232, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     66316	    32	 100.0	    33	................................	TACCAACAATAGCAATCTTTTCATTATCATTGA   	
     66381	    32	 100.0	    34	................................	ACTTTTTAAATAACTTGTCTGCAAGTCTAAATGT  	
     66447	    32	 100.0	    34	................................	CGCTTGATATTTGTATAATTCAACGACTAAATTA  	
     66513	    32	 100.0	    34	................................	CAAACTATCCAGCAGTAGAGCCAGCTGGTGATGA  	
     66579	    32	 100.0	    34	................................	TAAGCTATACATGGAAGAATTGATACATGAGGAC  	
     66645	    32	 100.0	    36	................................	ATTGTCACTGTTTGAAAATATCCATTTCTGGTACAC	
     66713	    32	 100.0	    35	................................	AAGTGTCCTAACCGCTTGCTTCCAGATTGGAAGTA 	
     66780	    32	 100.0	    33	................................	TATCTGGATAGGTGAAAACCTTGTCAACGGTTG   	
     66845	    32	 100.0	    35	................................	AAGTTCAAAGCCCAAGAATTTTTCCAGTTGTTCAA 	
     66912	    32	 100.0	    34	................................	TCCTTTGATTAAGCTAAAATTGTGATGTTGTCTT  	
     66978	    32	 100.0	    35	................................	AGTTGCATTGGAACACGGTTCGGGGGTGTAGTGAA 	
     67045	    32	 100.0	    35	................................	ATTATCGCTGGCATCTTCGAAGGATACCACATCCC 	
     67112	    32	 100.0	    35	................................	AGATTTGATACCAGCTTTATCGCGCATCTTGGCAT 	
     67179	    32	 100.0	    35	................................	TCCGCCAAAGACTCTACCTAAACCGTCTCCAAGAA 	
     67246	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA  	
     67312	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC   	
     67377	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC  	
     67443	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG             	Deletion [67498]
     67498	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG    	
     67562	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        20	    32	  97.2	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 9.09
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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