Array 1 63701-62140 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPK01000001.1 Staphylococcus delphini strain Heidy DSM20771_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 63700 36 100.0 37 .................................... CTTCTTCACTTTCTAAAGATGTAATTCTGACATTATC 63627 36 100.0 35 .................................... TGTGCATTGTTTAAATCAGTTATTTCTTGTACTCC 63556 36 100.0 39 .................................... TATTTTGTTCCTGCAAAAAGTGTTTCAAATAATAGCTCA 63481 36 100.0 38 .................................... GCTTCATTCTCGAATTAATACGTTGCCAGTTCATGTTT 63407 36 100.0 36 .................................... CTCTAATGTGGTCAAATAAGATTAATACTTTCATTT 63335 36 100.0 36 .................................... CACATCTTCTAATTTATTTGATTTTGCATTTCCAAT 63263 36 100.0 37 .................................... ACCATAATGTTTTGATTACCGTTCGCAATCGAATTGT 63190 36 100.0 37 .................................... ATTTTTATCTAGTGGTTATAAGTTGGTATTAGGTAAG 63117 36 100.0 36 .................................... TATCAATTCCTTTTCATTTGTTTTATTTGTTATCTT 63045 36 100.0 35 .................................... CCTGTTTCGTTCGCAATAATTTTGAGGTCACGACT 62974 36 100.0 36 .................................... TCATCAAAGTAATTAGCTAGCTCGGTGATAACTTCC 62902 36 100.0 37 .................................... ATCATTTTCATCAATTCCTTTTCTTTATTATAGTTTA 62829 36 100.0 37 .................................... ACGCAATTCGTCCATCACTTCTTCCGCCTGTGATTTT 62756 36 100.0 37 .................................... AATATTTAAATCCATGAAATGTACTACATAACGTGGG 62683 36 100.0 37 .................................... CTCGGTACTTTTTCAACCTAAAATGAATGCTGACGTT 62610 36 97.2 36 ............G....................... GATAATCCCGTTTTAATTTATCCTCGATATAATCGG A [62600] 62537 36 94.4 36 ............G........A.............. TGAAAACCTTTTATAACATCTGTCATTTCTTCCAAA A [62527] 62464 36 97.2 35 .....................A.............. ATTTATTACCGTCAATTTCTATTGCATATTTTTCT 62393 36 94.4 35 ..............T......A.............. GAGTGGCTTGATGAATTAGATGCATACCATTTTCA 62322 36 91.7 37 ............G.........A.........A... TTTTTCTTAATCTTCATCATCGTTCCTCCTTGTTTTT 62249 36 94.4 37 ......................A.........A... TTTCAGCATCATGAGAATATTCTTTTTCACTCGAATC 62176 36 69.4 0 .....T..T..A....G..T..A.....G.TTAT.. | T [62154] ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 97.2 37 AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Left flank : ATATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAGATGGGAGTATGGTAGCTTTGGCAATTGAATAGGCTGCGGAAATATGTTAACTGTAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAGAAGTTAAGAATAAAAAAATTGAAGTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGATTAAAGAGAAGGTGGCAGTATACAAAGGAAAAGTGGGAAATATACGATAATTACCATGAACAAGAATTGGCTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCTTGTGGATACGGTATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCACGCTATTAAGGGATTTCTATAGCTGACT # Right flank : CATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATATGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAACAAAGAAATGTTGTAAAATTTAATTAACATTTTAAGCGATAAAATGGAGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTATATGCATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTAAAAGGGGAAAGTATCAAGTTTAAAAATATTATAGATAAAACAGAGCGATATTTTTTATTAGATGATGTCGAAGCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGATACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 26728-25511 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPK01000028.1 Staphylococcus delphini strain Heidy DSM20771_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26727 36 100.0 29 .................................... CGTATGGCAGAAGAGATGGAAGGCGGTAT 26662 36 100.0 29 .................................... CCAAATTTGCCCCCTGAAATTGAGGTTAC 26597 36 100.0 30 .................................... TTCATGTGTTAGATTTTGTGGTTGAGGGCA 26531 36 100.0 29 .................................... ACGTTTATTATCTGAACGCCGTTTTTGCT 26466 36 100.0 29 .................................... TGCCATTTTGTCTGTCGCGCATAACCGCA 26401 36 100.0 30 .................................... ACCTTGGAAGTATCAACTTTAAGAACACCA 26335 36 100.0 30 .................................... AATATACAGATGAAAAGTATAATGAAGCGA 26269 36 100.0 30 .................................... CATGACTGTACTAGAAATGAAAGAGTTTTT 26203 36 100.0 29 .................................... GCAGTTGGAGCTTTAATGATTGCTGAGCC 26138 36 100.0 30 .................................... TGTTTTTCTATACTCAGCATTGAGCACAGT 26072 36 100.0 29 .................................... TTATTTTTGGAGATAATCCATTAATGCGC 26007 36 100.0 30 .................................... TGCAAAATGGTTACAAGGTTTGATGTGGGG 25941 36 100.0 30 .................................... GAAAAGTTGGCAAACGACTTAATAAAATCA 25875 36 100.0 30 .................................... TAACGCTTTGAAATATAAGAGAAACACAAA 25809 36 100.0 30 .................................... ATATCATACTGCTTAGCTTCTCACGCGTGC 25743 36 100.0 29 .................................... CCTAACATCAAACACATTACCTTTAACAA 25678 36 100.0 29 .................................... CATTAAGATGGATAATATTCTTTCTATTC 25613 36 94.4 30 AG.................................. AAGTAAGTTCGAATTCGCAACGAGTAATGC 25547 36 86.1 0 .......................TG..T.TA..... | C [25515] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : ATTATTTCCGGAGTCTCACTTGGGTATTCGCGATATTAAAGTATTTATGCAACTATTAAAGAAGTATCATTTCACAACAATTGTTTTCACCAATCATCCTTCTATCATCATTAATGAAGAAAACATATTTCTTTGTAAAATTAATAAAGAGTGTCATGACATTGAAAAAATAAAAGAAGAACTATCGTTATTTATTCCAGAAGAGATGGTGAGACATCAATTGACTAACATGATTGCTTATCACGAGTTTTTAGGTGAAAATCTTTCTGAGTTTGAACGTTATTTTAAGTTTATAAATCATTACAATTAAGTTATACTAAACACAATATAAATGGTTCGAGGATTGAAATACAAAACGATCAATGAGTAAGTTATAGCTATGTGACTTACTTCGTGATTAAGTTGAATTCCTATATCATTTGAGCATAATGATTTGCTTCTTTTATGTGTGCTAAGCCTCAATTTGATACAGAATCGAGTTGAGATTTTTGGAATTTGAG # Right flank : CTATTAAAAATCAAATATGAACTACATTTACGTCTCTCACTATGCTTTTACCTCAAATTAAAGTTATAGTGGGGGCTTTTTTTATTTTTTTGAAATTACCCCCCACCGCTTCCTATTCCTCCTCCATGTTATAATAACTACAAATGCTCATAAAAACAGAAAGAAAGTAGGGGAAATGTATGGAAGCAATTATTGCACGACAACCGTTCCAATTAGGTGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGGTACCAACACCCGGGGCACATGATATTTTAGTCAAGGTCCATGTGACTGGGGTGAATCCGGTTGATACGAAAATGCGTCAAGCGCCATTAAATGTTGATGCGCGTGTACTTGGCTTTGATGCGGCAGGTGTCGTTGAAGCAGTCGGTGATGCGGTTACGGATTTTAAAGCGGGTGACCGTGTGTACTATTCAGGTTCGAACCAACGAGATGGCTCCAATCAGACGTATCAGCTCGTGAATGAAAATTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //