Array 1 4008044-4007284 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWVC01000001.1 Escherichia coli isolate ecoli001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4008043 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 4007982 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 4007921 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 4007860 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 4007799 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 4007738 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 4007677 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 4007616 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 4007555 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 4007494 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 4007433 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4007373 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4007312 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4035047-4033737 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWVC01000001.1 Escherichia coli isolate ecoli001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4035046 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 4034985 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 4034924 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 4034863 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 4034802 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 4034741 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4034680 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4034619 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4034558 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 4034497 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 4034436 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 4034375 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 4034314 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 4034253 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 4034192 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4034131 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4034070 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4034009 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4033948 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4033887 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4033826 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4033765 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTCTTTAGGTTAATAGTTTGTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //