Array 1 31668-30063 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3650 NODE_1_length_244410_cov_70.370694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31667 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31606 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31545 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31484 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31423 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31361 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31300 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31233 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31172 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31111 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31050 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30989 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30928 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30867 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30806 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30744 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30641 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30580 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30519 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30458 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30397 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30336 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30275 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30214 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30092 29 96.6 0 A............................ | A [30065] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49720-47800 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3650 NODE_1_length_244410_cov_70.370694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49719 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 49658 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 49597 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 49536 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 49475 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 49414 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49353 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 49292 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 49231 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49170 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49109 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49048 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48987 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48926 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48865 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48804 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48743 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48682 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48621 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 48560 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48499 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48438 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 48377 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 48315 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 48254 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 48193 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 48132 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 48071 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48010 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47949 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 47888 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 47827 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //